Skip to main content

Trinity College Dublin, The University of Dublin

Trinity Menu Trinity Search

You are here People

Dr. Andrew Mc Donald
Visiting Research Fellow, Biochemistry

Publications and Further Research Outputs

Peer-Reviewed Publications

McDonald AG, Tipton KF., Enzyme nomenclature and classification: the state of the art, FEBS Journal, (Jan), 2022, pfebs.16274 Journal Article, 2022 DOI

McDonald A.G., Tipton K.F., Parameter reliability and understanding enzyme function, Molecules, 27, (1), 2022, p263 Journal Article, 2022 DOI

McDonald AG, Mariethoz J, Davey GP, Lisacek F., In silico analysis of the human milk oligosaccharide glycome reveals key enzymes of their biosynthesis., Scientific Reports, 27, (12(1)), 2022, p10846- Journal Article, 2022 DOI TARA - Full Text

McDonald AG and Davey GP , Simulating the enzymes of ganglioside biosynthesis with Glycologue, Beilstein Journal of Organic Chemistry , 2021 Journal Article, 2021 DOI

Martignoni M; Benedetti M; Davey GP; Tipton KF; McDonald A, Degradation of thymic humoral factor 2 in human, rat and mouse blood: an experimental and theoretical study, BBA - Proteins and Proteomics, 2020 Journal Article, 2020 DOI

Vare lija, D., Tipton, K.F., Davey, G.P. and McDonald, A.G., 6-Hydroxydopamine: a far from simple neurotoxin, Journal of Neural Transmission, 127, 2020, p213 - 230 Journal Article, 2020 DOI

McDonald A.G., Tipton K.F. and Davey G.P., A mechanism for bistability in glycosylation, PLOS Computational Biology, 14, (8), 2018, pe1006348- Journal Article, 2018 DOI TARA - Full Text

McDonald, A.G, Tipton, K.F. and Davey, G.P. , A knowledge-based system for display and prediction of O-glycosylation network behaviour in response to enzyme knockouts, PLOS Computational Biology, 12, (4), 2016, pe1004844- Journal Article, 2016 URL DOI

Andrew G. McDonald and Keith F. Tipton, The effects of tyramine and 4-aminophenol on the oscillating peroxidase-oxidase reaction, The Journal of Physical Chemistry B, 118, (1), 2014, p18 - 25 Journal Article, 2014 DOI

McDonald, A.G., Hayes, J.M., Bezak, T., Głuchowska, S.A., Cosgrave, E.F.J., Struwe, W.B., Stroop, C.J.M., Kok, H., van den Lar, T., Rudd, P.M., Tipton, K.F. and Davey, G.P., Galactosyltransferase 4 is a major control point for glycan branching in N-linked glycosylation, Journal of Cell Science, 127, 2014, p5014 - 5026 Journal Article, 2014 TARA - Full Text DOI

Andrew G. McDonald and Keith F. Tipton, Fifty-five years of Enzyme classification: advances and difficulties, FEBS Journal, 2013 Journal Article, 2013 DOI

Enzymes: Irreversible Inhibition. in, A.G. McDonald and K.F. Tipton, Keith F. , Encyclopedia of the Life Sciences (eLS)., Chichester., John Wiley & Sons, Ltd, 2012, [A.G. McDonald and K.F. Tipton.] Book Chapter, 2012

Tipton KF, Davey GP, McDonald AG, Kinetic behavior and reversible inhibition of monoamine oxidases--enzymes that many want dead., International review of neurobiology, 100, 2011, p43-64 Journal Article, 2011 DOI

McDonald AG, Tipton KF, Computer-controlled system for the study of oxidase reactions: application to the peroxidase-oxidase oscillator., The Journal of Physical Chemistry. B, 114, (49), 2010, p16244-52 Journal Article, 2010 DOI

McDonald, A.G., Tipton, K.F., Stroop, C.J., Davey G.P., GlycoForm and Glycologue: two software applications for the rapid construction and display of N-glycans from mammalian sources., BMC Research Notes, 18, (3), 2010, p1-7 Journal Article, 2010 TARA - Full Text

McDonald, AG, Tipton, KF, Computer-Controlled System for the Study of Oxidase Reactions: Application to the Peroxidase-Oxidase Oscillator, JOURNAL OF PHYSICAL CHEMISTRY B, 114, 2010 Journal Article, 2010

McDonald AG, Tipton KF and Davey GP, Mathematical modelling of metabolism, The Biochemist, 31, 2009, p24 - 27 Journal Article, 2009

Effects of pH on enzymes in, editor(s)D.L Purich , Enzyme Kinetics and Mechanism, New York, USA, Academic Pres, 2009, pp124 - 178, [Tipton, K.F., McDonald, A.G., Dixon, H.B.F.] Book Chapter, 2009

McDonald AG, Boyce S, Tipton KF, ExplorEnz: the primary source of the IUBMB enzyme list., Nucleic acids research, 37, (Database issue), 2009, pD593-7 Journal Article, 2009 DOI

McDonald AG, Tipton KF, Boyce S, Tracing metabolic pathways from enzyme data., Biochimica et biophysica acta, 1794, (9), 2009, p1364-71 Journal Article, 2009 DOI

Kotera, M., McDonald, A.G., Boyce, S. and Tipton, K.F. , Functional Group and Substructure Searching as a Tool in Metabolomics, PLoS ONE , 3, (2, e1537), 2008, p1-8 Journal Article, 2008 DOI URL TARA - Full Text

Andrew G. McDonald; Sinead Boyce; Keith F. Tipton, ExplorEnz: the primary source of the IUBMB enzyme list, Nucleic Acids Research, 2008 Journal Article, 2008 URL DOI

McDonald, A.G., Boyce, S., Moss, G.P., Dixon, H.B.F. and Tipton, K.F., ExplorEnz: a MySQL database of the Enzyme Nomenclature, BMC Biochemistry, 8, (14), 2007, p1-7 Journal Article, 2007 URL DOI

Non-Peer-Reviewed Publications

O-Glycologue: A Formal-Language-Based Generator of O-Glycosylation Networks in, editor(s)Davey, G.P. , Glycosyltion, New York, Humana, 2022, pp223 - 236, [McDonald A.G., Davey G.P.] Book Chapter, 2022 DOI



Biochemical Society, Royal Society of Chemistry (M.R.S.C.), Society for Mathematical Biology, BioPathways Consortium