Biology |
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Module Code & Name | ECTs credits | Duration and semester | Prerequisite Subjects | Assessment | Contact Hours | Contact Details |
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(Introduction to Molecular and Cellular Biology(BY1101)) |
(10 ECTS credits) | 12 weeks Semester 1 | NA | CA (including Lab MCQ test) - 33.3% End of Semester Written Exam - 66.6% | c.80 | Prof. John Rochford, Biology Teaching Centre(rchfordj@tcd.ie) |
DescriptionThis module is an introduction to molecular and cellular biology, including biochemistry, genetics, developmental biology and microbiology. The levels of understanding in biology are covered, from ecosystems to molecules. A description of the possible origin of life, from the abiotic world to multicellular organisms will be given, and the ultrastucture of the eukaryotic cell will be covered in detail. The major properties and functions of each class of biochemicals (carbohydrates, lipids, proteins and nucleic acids) will be described. Students will then be introduced to some basic concepts in genetics, considering the experimental evidence on which they are based and gaining insights into the central place of genetics in the biological sciences. Developmental biology deals with how a complex organism is established from a single cell - the fertilized egg cell - and has relevance to our understanding of stem cells and how normal cells are regulated. Finally, Microbiology deals with prokaryotic and eukaryotic microorganisms, and viruses. Students study cell and virus structure, cell growth and viral replication, infectious diseases and host immunity. Learning Outcomes:On successful completion of the module, students will be able to:
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Module Code & Name | ECTs credits | Duration and semester | Prerequisite Subjects | Assessment | Contact Hours | Contact Details |
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(Introduction to Evolution, Biodiversity and the Environment (BY1102) |
(10 ECTS credits) | 12 weeks Semester 2 | NA | CA (including Study Week essay) - 40% End of Semester MCQ test - 60% | c.60 | Prof. John Rochford, Biology Teaching Centre(rchfordj@tcd.ie) |
DescriptionThis module will introduce students to the biology of individuals, species, populations and communities, and how humans affect, are effected by, and benefit from, other living organisms. We will cover evolutionary (past) and ecological (present) responses to their environment, using examples from the multicellular Animal and Plant Kingdoms. Topics covered in this module will incorporate the diversity of life, interactions between organisms and between organisms and the environment, the biological context of climate change, human impacts on the environment, and the value and conservation of biodiversity. Learning Outcomes:On successful completion of this course, the student will be able to:
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Module Code & Name | ECTs credits | Duration and semester | Prerequisite Subjects | Assessment | Contact Hours | Contact Details |
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(Cell Structure and Function BY2201) |
(5 ECTS credits) | 5 weeks Semester 1 | Year 1 Introductory Biology module(equivalent to BY1101) | CA (including Lab tests and write-ups) - 35% End of Semester Written Exam - 65% | c.35 | Prof. John Rochford, Biology Teaching Centre(rchfordj@tcd.ie) |
DescriptionBY2201 will provide the student with a comprehensive account of the essential principles of Cell Biology and Biochemistry. The structure, function and biochemistry of the eukaryotic cell and its sub-cellular organelles will be detailed, including mechanisms such as DNA and protein synthesis and the Cell Cycle. Cytoskeletal function (how filaments coordinate cell division, mobility and intracellular movement) will also be explained. Students will attain a good understanding of the Structure and Function of Proteins, which are the most variable macromolecules in living systems and serve crucial functions in essentially all biological processes. This will provide the background to explore topics such as Enzyme Kinetics, Signal Transduction (how cells receive, process and respond to information from the environment) and Neurochemistry (Nervous tissue metabolism and the mechanism of action of neurotransmitters). The lecture course will be delivered in parallel with a laboratory-based series of experiments in Biochemistry. Learning Outcomes:On successful completion of this module, students will be able to:
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Module Code & Name | ECTs credits | Duration and semester | Prerequisite Subjects | Assessment | Contact Hours | Contact Details |
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(Vertebrate Form and Function BY2202) |
(5 ECTS credits) | 5 weeks Semester 1 | NA | CA (5 Lab tests) - 25% End of Semester Written Exam - 75% | c.35 | Prof. John Rochford, Biology Teaching Centre(rchfordj@tcd.ie) |
DescriptionBY2202 covers the anatomy and physiology of humans and other vertebrates, with emphasis on the importance of anatomical structure to the function of physiological systems. The systems covered in detail include the nervous, musculoskeletal, cardiovascular, respiratory, renal, digestive, endocrine and reproductive systems. The practical component of the module includes two laboratory classes in vertebrate anatomy and three laboratory classes in which fundamental neurophysiological, cardiovascular and respiratory parameters are measured in human subjects. Learning outcomes:On successful completion of this module, students will be able to:
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Module Code & Name | ECTs credits | Duration and semester | Prerequisite Subjects | Assessment | Contact Hours | Contact Details |
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(Metabolism BY2203) |
(5 ECTS credits) | 5 weeks Semester 1 | Year 1 Introductory Biology module (equivalent to BY1101) and preferably BY2201 | CA (including Lab tests and write-ups) - 30% End of Semester Written Exam - 70% | c.35 | Prof. John Rochford, Biology Teaching Centre(rchfordj@tcd.ie) |
DescriptionThe principles of metabolism and its control will be explored in BY2203 using the glycolytic pathway as the principal example. It will be seen that the rate of flux through the different enzyme reactions is determined by differences in gene regulation, kinetics, and hormonally driven phosphorylation/dephosphorylation. The way this pathway is differentially regulated in different cell types and organs will show how metabolic diversity is achieved. Storage of glucose and breakdown, and how cells and organisms generate free energy follows. In addition, the atomic-level structural aspects of the 'nanomachines' involved in key pathways will be discussed. After being introduced to the metabolism of the other two macro-nutrients (namely fats and proteins), a final integration of carbohydrate (glucose) metabolism will show how all of the pathways are highly interconnected. The lecture course will be delivered in parallel with a laboratory course. Learning Outcomes:On successful completion of this module, students will be able to:
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Module Code & Name | ECTs credits | Duration and semester | Prerequisite Subjects | Assessment | Contact Hours | Contact Details |
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(Evolution BY2204) |
(5 ECTS credits) | 5 weeks Semester 1 | NA | CA (3 practical assignments) - 25% End of Semester Written Exam - 75% | c.35 | Prof. John Rochford, Biology Teaching Centre(rchfordj@tcd.ie) |
DescriptionBY2204 is designed to teach evolution and the main concepts explaining Natural Diversification. In the first part, general evolutionary concepts are covered, including an historical perspective that spans pre-Darwinian and post-Darwinian thinking and goes from the macro-evolutionary concepts (origins of life, speciation, Natural Selection, Kin Selection and altruism and population genetics) to the micro-evolutionary details (molecular evolution, phylogenetics, human evolution and evolution and development). The second part, covers evolutionary patterns and processes in plants, including plant-animal/ plant-fungi coevolutionary dynamics and how constraints are artificially intensified during domestication of plants and animals. Practicals, some of a computational nature, will support both parts of the module. Learning Outcomes:On successful completion of this module, students will be able to:
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Module Code & Name | ECTs credits | Duration and semester | Prerequisite Subjects | Assessment | Contact Hours | Contact Details |
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(Microbiology BY2205) |
(5 ECTS credits) | 5 weeks Semester 2 | Year 1 Introductory Biology module (equivalent to BY1101) | CA (including Lab MCQ test) - 25% End of Semester Written Exam - 75% | c.35 | Prof. John Rochford, Biology Teaching Centre(rchfordj@tcd.ie) |
DescriptionBY2205 provides a comprehensive introduction to the microbial sciences through lectures and practical classes provided by experts in the field. Students will learn about the biology of the major groups of microbes, including bacteria, viruses, yeast and protozoa. The course explains how microorganisms grow and develop, how they interact with the environment and with one another. This module will equip the students with a sound foundation in microbial physiology, cell biology and molecular biology. Learning Outcomes:On successful completion of this module, students will be able to:
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Module Code & Name | ECTs credits | Duration and semester | Prerequisite Subjects | Assessment | Contact Hours | Contact Details |
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(Ecosystem Biology and Global Change BY2206) |
(5 ECTS credits) | 5 weeks Semester 2 | NA | CA (4 Lab/practical assignments) - 25% End of Semester Written Exam - 75% | c.35 | Prof. John Rochford, Biology Teaching Centre(rchfordj@tcd.ie) |
DescriptionBY2206 focuses on exploring how organisms interact with their environment across the range of global biomes (both terrestrial and aquatic). The adaptation of organisms to their environment is a persistent theme throughout. Ecological modelling is used to investigate ecosystem functioning and maintenance in relation to environmental change. The lectures are supported by four diverse practical classes, one is held in the Biology Laboratory, one in the TCD Botanic Gardens, one in a computer lab and the final one on a field trip to the North Bull Island. These practicals serve to illustrate the wide range of ecological concepts covered in the lectures Learning Outcomes:On successful completion of this module, students will be able to:
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Module Code & Name | ECTs credits | Duration and semester | Prerequisite Subjects | Assessment | Contact Hours | Contact Details |
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(Behaviour BY2207) |
(5 ECTS credits) | 5 weeks Semester 2 | NA | CA (2 practical assignments and 4 on-line quizz es) - 25% End of Semester Written Exam - 75% | c.35 | Prof. John Rochford, Biology Teaching Centre (rchfordj@tcd.ie) |
DescriptionThe animal behaviour module comprises a series of lectures, four assessments carried out online after watching a video and two practicals. One of the practicals is carried out in your own time, at Dublin Zoo, and assessed online. The other is carried out as a group in a timetabled slot, and is followed by an explanatory lecture, and an online assessment. The module covers a wide range of topics, beginning with a brief history of behavioural research. You then have a series of lectures on different influences on behaviour including group dynamics, genetic, hormonal, developmental and neurobiological influences. These lectures will be given by experts in each of these fields. You are then introduced to various aspects of learning, cultural transmission, cognition and intelligence in animals. The module concludes with a lecture and then a class debate on the ethics of animal-human interactions. Learning Outcomes:On successful completion of this module, students will be able to:
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Module Code & Name | ECTs credits | Duration and semester | Prerequisite Subjects | Assessment | Contact Hours | Contact Details |
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(Genetics BY2208) |
(5 ECTS credits) | 5 weeks Semester 2 | Year 1 Introductory Biology module (equivalent to BY1101) | CA (including 2 practical assessments and Lab MCQ test) - 25% End of Semester Written Exam - 75% | c.35 | Prof. John Rochford, Biology Teaching Centre(rchfordj@tcd.ie) |
DescriptionBY2208 will provide an introduction to analytical, molecular and cellular genetics. Topics will include: DNA and RNA synthesis and the genetic code; principles of gene expression and the mechanisms that control it - with illustrations of importance in development and behaviour; human genetic analysis - deciphering the genetics of disease - and insights from the human genome project; variation in genetics among human populations; the genetic basis of cancer. A parallel practical course will introduce techniques in molecular genetics and bioinformatics. Learning Outcomes:On successful completion of this module, students will be able to:
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Module Code & Name | ECTs credits | Duration and semester | Prerequisite Subjects | Assessment | Contact Hours | Contact Details |
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(Infection and Immunity BY2209) |
(5 ECTS credits) | 5 weeks Semester 2 | Year 1/2 Basic Biochemistry and Microbiology(equivalent to BY2201 and BY2205) | CA (including Lab MCQ test) - 25% End of Semester Written Exam - 75% | c.35 | Prof. John Rochford, Biology Teaching Centre(rchfordj@tcd.ie) |
DescriptionThe focus of this module is on pathogens and their interaction with host organisms, particularly humans. Students will learn about major pathogenic bacteria, viruses, protozoa and fungi, the mechanisms by which they cause disease, and approaches to controlling them. Innate and acquired immune responses to these pathogens will be presented. Molecular processes and genetic influences underpinning resolution or exacerbation of infection will be explored. Mechanisms for manipulation of host defence will also be covered. Learning Outcomes:On successful completion of this module, students will be able to:
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Module Code & Name | ECTs credits | Duration and semester | Prerequisite Subjects | Assessment | Contact Hours | Contact Details |
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(Agriculture, Environment and Biotechnology BY2210) |
(5 ECTS credits) | 5 weeks Semester 2 | NA | CA (including 4 Lab assessments) - 25% End of Semester Written Exam - 75% | c.35 | Prof. John Rochford, Biology Teaching Centre(rchfordj@tcd.ie) |
DescriptionBy 2050 the UN estimates that the world will need 70% more food, 55% more clean water and 60% more energy than it does today. These demands will have to be addressed alongside changing climate, increased pollution and depleting natural resources. Plants are central to our efforts to sustainably use biological resources and are among our most valuable resources. Their sustainable utilization is crucial for the future of humankind as plants provide the food we eat, many of the medicines we depend on and the air we breathe. They also regulate our climate. This module discusses how plants, and to a lesser extent animals, are exploited as bioresources in agriculture, environmental sciences and biotechnology. It covers domestication, sustainable agriculture, plant breeding and biotechnology, biological pest control, pollination services, non-food crops, conservation of genetic resources, bioprospecting and ethnobiology, the regulation of the global carbon cycle, climate change, water technology and pollution. Learning Outcomes:On successful completion of this module, students will be able to:
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* not suitable for a one semester visiting student as the major CA component cannot be completed, for logistic reasons, until mid way through semester 2. ** takes place during week 34. Additional charge (c.250.00) applies. |