Skip to main content

Trinity College Dublin, The University of Dublin

Trinity Menu Trinity Search



You are here People

Carsten Kroger
, Microbiology

Publications and Further Research Outputs

Peer-Reviewed Publications

Kröger C, Schauer K, Clerkin S, Maertlbauer E and Fleming AB, Draft Genome Sequence and Annotation of Acinetobacter junii MHI21018, Isolated from Bovine Colostrum, Microbiology Resource Announcements, 2019 Journal Article, 2019 DOI

Canals R, Hammarlöf DL, Kröger C, Owen SV, Fong WY, Lacharme-Lora L, Zhu X, Wenner N, Carden SE, Honeycutt J, Monack DM, Kingsley RA, Brownridge P, Chaudhuri RR, Rowe WPM, Predeus AV, Hokamp K, Gordon MA, Hinton JCD., Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580., PLoS biology, 17, (1), 2019, pe3000059 Journal Article, 2019 DOI

Pulford CV, Wenner N, Redway ML, Rodwell EV, Webster HJ, Escudero R, Kröger C, Canals R, Rowe W, Lopez J, Hall N, Rowley PD, Timofte D, Harrison RA, Baker KS and Hinton JCD, The diversity, evolution and ecology of Salmonella in venomous snakes, PLoS Neglected Tropical Diseases, 2019 Journal Article, 2019 DOI

Kröger C, Rothhardt JE, Brokatzky D, Felsl A, Kary SC, Heermann R, Fuchs TM, The small RNA RssR regulates myo-inositol degradation by Salmonella enterica, Scientific Reports, 2018 Journal Article, 2018 DOI

Hammarlöf DL, Kröger C, Owen SV, Canals R, Lacharme-Lora L, Wenner N, Schager AE, Wells TJ, Henderson IR, Wigley P, Hokamp K, Feasey NA, Gordon MA, Hinton JCD., Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella., Proceedings of the National Academy of Sciences of the United States of America, 2018 Journal Article, 2018 DOI

Kröger C, MacKenzie KD, Alshabib EY, Kirzinger MWB, Suchan DM, Chao TC, Akulova V, Miranda-CasoLuengo AA, Monzon VA, Conway T, Sivasankaran SK, Hinton JCD, Hokamp K, Cameron ADS., The primary transcriptome, small RNAs and regulation of antimicrobial resistance in Acinetobacter baumannii ATCC 17978., Nucleic Acids Research, 2018 Journal Article, 2018 DOI

Perry BJ, Fitzgerald SF, Kröger C, Cameron AD, Whole-Genome Sequence and Annotation of Salmonella enterica subsp. enterica Serovar Enteritidis Phage Type 8 Strain EN1660, Genome Announcements, 2017 Journal Article, 2017 DOI

Miranda-CasoLuengo AA, Kary SC, Erhardt M and Kröger C, Small RNA, Big Effect: Control of Flagellin Production., Trends in Microbiology, 2017 Journal Article, 2017 DOI

Cameron DS, SC Dillon, C Kröger, L Beran, CJ Dorman, Broad scale redistribution of mRNA abundance and transcriptional machinery in response to growth rate in Salmonella enterica serovar Typhimurium, Microbial Genomics, 3, 2017, p1 - 10 Journal Article, 2017 DOI URL

Colgan AM, Cameron AD, Kröger C, If it transcribes, we can sequence it: mining the complexities of host-pathogen-environment interactions using RNA-seq, Current Opinion in Microbiology, 9, (36), 2017, p37 - 46 Journal Article, 2017 DOI

Kröger C, Kary SC, Schauer K, Cameron AD., Genetic Regulation of Virulence and Antibiotic Resistance in Acinetobacter baumannii, Genes (Basel), 2016 Journal Article, 2016 DOI

Colgan AM, Kröger C, Diard M, Hardt WD, Puente JL, Sivasankaran SK, Hokamp K, Hinton JC, The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium., PLoS Genetics, 12, (8), 2016, pe1006258 Journal Article, 2016 DOI

Srikumar S, Kröger C, Hébrard M, Colgan A, Owen SV, Sivasankaran SK, Cameron AD, Hokamp K, Hinton JC, RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium, PLoS Pathogens, 2015 Journal Article, 2015 DOI

MacKenzie KD, Wang Y, Shivak DJ, Wong CS, Hoffman LJ, Lam S, Kröger C, Cameron AD, Townsend HG, Köster W, White AP, Bistable Expression of CsgD in Salmonella enterica Serovar Typhimurium Connects Virulence to Persistence, Infection and immunity, 83, (6), 2015, p2312 - 2326 Journal Article, 2015 DOI

Rothhardt JE, Kröger C, Broadley SP, Fuchs TM, The orphan regulator ReiD of Salmonella enterica is essential for myo‐inositol utilization, Molecular Microbiology, 94, (3), 2014, p700 - 712 Journal Article, 2014 DOI

Cameron ADS, Kröger C, Quinn HJ, Scally IK, Daly AJ, Kary SC, Dorman CJ, Transmission of an oxygen availability signal at the Salmonella enterica serovar Typhimurium fis promoter, PLoS One, 8, (12), 2013, pe84382 Journal Article, 2013 DOI TARA - Full Text

Kröger C, Colgan A, Srikumar S, Händler K, Sivasankaran SK, Hammarlöf DL, Canals R, Grissom JE, Conway T, Hokamp K, Hinton JC, An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium., Cell host & microbe, 14, (6), 2013, p683-95 Journal Article, 2013 TARA - Full Text DOI

Kröger C, Dillon SC, Cameron AD, Papenfort K, Sivasankaran SK, Hokamp K, Chao Y, Sittka A, Hébrard M, Händler K, Colgan A, Leekitcharoenphon P, Langridge GC, Lohan AJ, Loftus B, Lucchini S, Ussery DW, Dorman CJ, Thomson NR, Vogel J, Hinton JC, The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium., Proceedings of the National Academy of Sciences of the United States of America, 109, (20), 2012, pE1277-86 Journal Article, 2012 DOI

Hébrard M, Kröger C, Srikumar S, Colgan A, Händler K, Hinton JC, sRNAs and the virulence of Salmonella enterica serovar Typhimurium, RNA biology, 9, (4), 2012, p437 - 445 Journal Article, 2012 DOI

Hébrard M, Kröger C, Sivasankaran SK, Händler K, Hinton JC, The challenge of relating gene expression to the virulence of Salmonella enterica serovar Typhimurium., Current opinion in biotechnology, 2011 Journal Article, 2011 DOI

Kröger C, Srikumar S, Ellwart J, Fuchs TM, Bistability in myo-inositol utilization by Salmonella enterica serovar Typhimurium., Journal of bacteriology, 193, (6), 2011, p1427-35 Journal Article, 2011 DOI

Kröger C, Stolz J, Fuchs TM, myo-Inositol transport by Salmonella enterica serovar Typhimurium., Microbiology (Reading, England), 156, (Pt 1), 2010, p128-38 Journal Article, 2010 DOI

Kröger C, Fuchs TM, Characterization of the myo-inositol utilization island of Salmonella enterica serovar Typhimurium., Journal of bacteriology, 191, (2), 2009, p545-54 Journal Article, 2009 DOI

Kreutzenbeck P, Kröger C, Lausberg F, Blaudeck N, Sprenger GA, Freudl R, Escherichia coli twin arginine (Tat) mutant translocases possessing relaxed signal peptide recognition specificities., The Journal of biological chemistry, 282, (11), 2007, p7903-11 Journal Article, 2007 DOI

Non-Peer-Reviewed Publications

Pulford CV, Wenner N, Redway ML, Rodwell EV, Webster HJ, Escudero R, Kröger C, Canals R, Rowe W, Lopez J, Hall N, Rowley PD, Timofte D, Harrison RA, Baker KS and Hinton JCD, The diversity, evolution and ecology of Salmonella in venomous snakes, bioRxiv, 2019 Journal Article, 2019 DOI

Kröger C, FNR regulates the expression of SPI-2 in Salmonella Typhimurium, Microbiological Seminar, University of Regina, Canada, 2018 Oral Presentation, 2018

Kröger C, MacKenzie KD, Hinton JCD, Hokamp K, Cameron ADS, The Primary Transcriptome, small RNAs and Regulation of Antimicrobial Resistance in Acinetobacter baumannii, 5th Meeting of Regulating with RNA in Bacteria & Archaea, Seville, Spain, 2018, 2018 Poster, 2018

Kröger C, The importance of understanding gene regulation in bacterial pathogens, VAAM Summer School, Tutzing, Germany, 2018 Oral Presentation, 2018

Canals R, Hammarlöf DL, Kröger C, Owen SV, Fong WY, Lacharme-Lora L, Zhu X, Wenner N, Carden SE, Honeycutt J, Monack DM, Kingsley RA, Brownridge P, Chaudhuri RR, Rowe WPM, Predeus AV, Hokamp K, Gordon MA, Hinton JCD, Adding function to the genome of African Salmonella ST313, bioRxiv, 2018 Journal Article, 2018 DOI

Hammarlöf DL, Kröger C, Owen SV, Canals R, Lacharme-Lora L, Wenner N, Wells TJ, Henderson IJ, Wigley P, Hokamp K, Feasey NA, Gordon MA, Hinton JCD, The role of a single non-coding nucleotide in the evolution of an epidemic African clade of Salmonella, bioRxiv, 2017, p175265- Journal Article, 2017

Kröger C, Navigating the Transcriptional Landscape of Salmonella using RNA-seq, SFB 944 Seminar, University of Osnabrück, 10th January, 2017 Invited Talk, 2017

Kröger C, MacKenzie KD, Al-Shabib EY, Kirzinger MWB, Suchan DM, Chao TC, Akulova V, Miranda-CasoLuengo AA, Monzon VA, Conway T, Sivasankaran SK, Hinton JCD, Hokamp K, Cameron ADS, The primary transcriptome, small RNAs, and regulation of antimicrobial resistance in Acinetobacter baumannii, bioRxiv, 2017, p236794- Journal Article, 2017

Kary S, S Dillon, A Colgan, S Sivasankaran, K Hokamp, CJ Dorman, J Hinton, A Cameron, C Kroger, FNR is a regulator of SPI2 in Salmonella Typhimurium , Microbiology Society Annual Conference, Edinburgh International Conference Centre, April 3, 2017, pp570 - 570 Poster, 2017

Kröger C, Navigating the Transcriptional Landscape in Salmonella Typhimurium, Helmholtz Centre for Infection Research, Braunschweig, Germany, 2nd September, 2016 Invited Talk, 2016

Kröger C, Colgan A, Srikumar S, Diard M, Hardt WD, Hokamp K, Hinton JCD, SalComRegulon Adds Regulatory Insights to the Online SalCom Salmonella Gene Expression Compendium, 5th ASM Conference on Salmonella, Potsdam, Germany, 2016 Poster, 2016

Research Expertise

Projects

  • Title
    • Linking persister cell formation and virulence of Salmonella enterica serovar Typhimurium
  • Funding Agency
    • Irish Research Council
  • Date From
    • April 2017
  • Date To
    • April 2019

Keywords

ACINETOBACTER; BACTERIA; GENE REGULATION; MICROBIOLOGY; MOLECULAR GENETICS; SALMONELLA

Recognition

Memberships

Microbiology Society 2010

American Society for Microbiology 2010

European Society of Clinical Microbiology and Infectious Diseases 2015

Society for Applied Microbiology 2019