Publications and Further Research Outputs
Peer-Reviewed Publications
McDonald AG, Tipton KF., Enzyme nomenclature and classification: the state of the art, FEBS Journal, (Jan), 2022, pfebs.16274
McDonald A.G., Tipton K.F., Parameter reliability and understanding enzyme function, Molecules, 27, (1), 2022, p263
McDonald AG, Mariethoz J, Davey GP, Lisacek F., In silico analysis of the human milk oligosaccharide glycome reveals key enzymes of their biosynthesis., Scientific Reports, 27, (12(1)), 2022, p10846-
McDonald AG and Davey GP , Simulating the enzymes of ganglioside biosynthesis with Glycologue, Beilstein Journal of Organic Chemistry , 2021
Martignoni M; Benedetti M; Davey GP; Tipton KF; McDonald A, Degradation of thymic humoral factor
Vare lija, D., Tipton, K.F., Davey, G.P. and McDonald, A.G., 6-Hydroxydopamine: a far from simple neurotoxin, Journal of Neural Transmission, 127, 2020, p213 - 230
McDonald A.G., Tipton K.F. and Davey G.P., A mechanism for bistability in glycosylation, PLOS Computational Biology, 14, (8), 2018, pe1006348-
McDonald, A.G, Tipton, K.F. and Davey, G.P. , A knowledge-based system for display and prediction of O-glycosylation network behaviour in response to enzyme knockouts, PLOS Computational Biology, 12, (4), 2016, pe1004844-
Andrew G. McDonald and Keith F. Tipton, The effects of tyramine and 4-aminophenol on the oscillating peroxidase-oxidase reaction, The Journal of Physical Chemistry B, 118, (1), 2014, p18 - 25
McDonald, A.G., Hayes, J.M., Bezak, T., Głuchowska, S.A., Cosgrave, E.F.J., Struwe, W.B., Stroop, C.J.M., Kok, H., van den Lar, T., Rudd, P.M., Tipton, K.F. and Davey, G.P., Galactosyltransferase 4 is a major control point for glycan branching in N-linked glycosylation, Journal of Cell Science, 127, 2014, p5014 - 5026
Andrew G. McDonald and Keith F. Tipton, Fifty-five years of Enzyme classification: advances and difficulties, FEBS Journal, 2013
Enzymes: Irreversible Inhibition. in, A.G. McDonald and K.F. Tipton, Keith F. , Encyclopedia of the Life Sciences (eLS)., Chichester., John Wiley & Sons, Ltd, 2012, [A.G. McDonald and K.F. Tipton.]
Tipton KF, Davey GP, McDonald AG, Kinetic behavior and reversible inhibition of monoamine oxidases--enzymes that many want dead., International review of neurobiology, 100, 2011, p43-64
McDonald AG, Tipton KF, Computer-controlled system for the study of oxidase reactions: application to the peroxidase-oxidase oscillator., The Journal of Physical Chemistry. B, 114, (49), 2010, p16244-52
McDonald, A.G., Tipton, K.F., Stroop, C.J., Davey G.P., GlycoForm and Glycologue: two software applications for the rapid construction and display of N-glycans from mammalian sources., BMC Research Notes, 18, (3), 2010, p1-7
McDonald, AG, Tipton, KF, Computer-Controlled System for the Study of Oxidase Reactions: Application to the Peroxidase-Oxidase Oscillator, JOURNAL OF PHYSICAL CHEMISTRY B, 114, 2010
McDonald AG, Tipton KF and Davey GP, Mathematical modelling of metabolism, The Biochemist, 31, 2009, p24 - 27
Effects of pH on enzymes in, editor(s)D.L Purich , Enzyme Kinetics and Mechanism, New York, USA, Academic Pres, 2009, pp124 - 178, [Tipton, K.F., McDonald, A.G., Dixon, H.B.F.]
McDonald AG, Boyce S, Tipton KF, ExplorEnz: the primary source of the IUBMB enzyme list., Nucleic acids research, 37, (Database issue), 2009, pD593-7
McDonald AG, Tipton KF, Boyce S, Tracing metabolic pathways from enzyme data., Biochimica et biophysica acta, 1794, (9), 2009, p1364-71
Kotera, M., McDonald, A.G., Boyce, S. and Tipton, K.F. , Functional Group and Substructure Searching as a Tool in Metabolomics, PLoS ONE , 3, (2, e1537), 2008, p1-8
Andrew G. McDonald; Sinead Boyce; Keith F. Tipton, ExplorEnz: the primary source of the IUBMB enzyme list, Nucleic Acids Research, 2008
McDonald, A.G., Boyce, S., Moss, G.P., Dixon, H.B.F. and Tipton, K.F., ExplorEnz: a MySQL database of the Enzyme Nomenclature, BMC Biochemistry, 8, (14), 2007, p1-7
Non-Peer-Reviewed Publications
O-Glycologue: A Formal-Language-Based Generator of O-Glycosylation Networks in, editor(s)Davey, G.P. , Glycosyltion, New York, Humana, 2022, pp223 - 236, [McDonald A.G., Davey G.P.]
Recognition
Memberships
Biochemical Society, Royal Society of Chemistry (M.R.S.C.), Society for Mathematical Biology, BioPathways Consortium