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You are here Research > Research Groups > Functional Genomics of Pathogenic Bacteria > Publications

Publications

Highlighted Publications:

The primary transcriptome, small RNAs and regulation of antimicrobial resistance in Acinetobacter baumannii
Kröger C, MacKenzie KD, Al-shabib EY, Kirzinger MW, Suchan DM, Chao TC, Akulova V, Miranda-CasoLuengo AA, Monzon VA, Conway T, Sivasankaran SK, Hinton JC, Hokamp K, Cameron AD.
Nucleic Acids Research 2018 Oct 12;46(18):9684-9698. doi: 10.1093/nar/gky603

Role of a single noncoding nucleotide in the evolution of an African clade of Salmonella.
Hammarlöf DL*, Kröger C*, Owen SV*, Canals R, Lacharme-Lora L, Wenner N, Schager AE, Wells TJ, Henderson IR, Wigley P, Hokamp K, Feasey NA, Gordon MA, Hinton JC
Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):E2614-E2623. doi: 10.1073/pnas.1714718115.
*Contributed equally

RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium
Srikumar S*, Kröger C*, Hébrard M, Colgan A, Owen SV, Sivasankaran SK, Cameron AD, Hokamp K, Hinton JC.
PLoS Pathog . 2015 Nov 12;11(11):e1005262. doi: 10.1371/journal.ppat.1005262. eCollection 2015 Nov.
*Contributed equally

An infection-relevant transcriptomic compendium for Salmonella enterica serovar Typhimurium.
Kröger C , Colgan A, Srikumar S, Händler K, Sivasankaran SK, Hammarlöf DL, Canals R, Grissom JE, Conway T, Hokamp K, Hinton JC.
Cell Host Microbe. 2013 Dec 11;14(6):683-95. doi: 10.1016/j.chom.2013.11.010.

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.
Kröger C , Dillon SC, Cameron AD, Papenfort K, Sivasankaran SK, Hokamp K, Chao Y, Sittka A, Hébrard M, Händler K, Colgan A, Leekitcharoenphon P, Langridge GC, Lohan AJ, Loftus B, Lucchini S, Ussery DW, Dorman CJ, Thomson NR, Vogel J, Hinton JC.
Proc Natl Acad Sci U S A. 2012 May 15;109(20):E1277-86. doi: 10.1073/pnas.1201061109. Epub 2012 Apr 25.

Publications

Pulford CV, Wenner N, Redway ML, Rodwell EV, Webster HJ, Escudero R, Kröger C, Canals R, Rowe W, Lopez J, Hall N, Rowley PD, Timofte D, Harrison RA, Baker KS, Hinton JCD. (2019)
The diversity, evolution and ecology of Salmonella in venemous snakes.
PLoS Negl Trop Dis, Jun 4;13(6):e0007169. doi: 10.1371/journal.pntd.0007169.

Kröger C , Schauer K, Clerkin S, Märtlbauer E, Fleming AB (2019)
Draft Genome Sequence and Annotation of Acinetobacter junii MHI21018, Isolated from Bovine Colostrum.
Microbiology Resource Announcements. Microbiol Resour Announc. 2019 Mar 7;8(10). pii: e01700-18. doi: 10.1128/MRA.01700-18.

Canals R, Hammarlöf DL, Kröger C, Owen SV, Fong WY, Lacharme-Lora L, Zhu X, Wenner N, Carden SE, Honeycutt J, Monack DM, Kingsley RA, Brownridge P, Chaudhuri RR, Rowe WPM, Predeus AV, Hokamp K, Gordon MA, Hinton JCD. (2019)
Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580.
PLoS Biology. Jan 15;17(1):e3000059. doi: 10.1371/journal.pbio.3000059.

The small RNA RssR regulates myo-inositol degradation by Salmonella enterica
Kröger C , Rothhardt JE, Brokatzky D, Felsl A, Kary SC, Heermann R, Fuchs TM.
Scientific Reports 2018 Dec 8, doi: doi.org/10.1038/s41598-018-35784-8

Broad-scale distribution of mRNA abundance and transcriptional machinery in response to growth rate in Salmonella enterica serovar Typhimurum.
Cameron AD, Dillon SC, Kröger C, Beran L, Dorman CJ.
Microb Genom. 2017 Aug 4;3(10):e000127. doi: 10.1099/mgen.0.000127.

Small RNA, big Effect: Control of Flagellin Production.
Miranda CasoLuengo AA, Kary SC, Erhardt M, Kröger C.
Trends Microbiol. 2017 Dec;25(12):953-954. doi: 10.1016/j.tim.2017.10.003. Review

If it transcribes, we can sequence it: mining the complexities of host-pathogen-environment interactions using RNA-seq.
Colgan AM, Cameron AD, Kröger C.
Curr Opin Microbiol. 2017 Feb 9;36:37-46. doi: 10.1016/j.mib.2017.01.010. Review.

Whole-Genome Sequence and Annotation of Salmonella enterica subsp. enterica Serovar Enteritidis Phage Type 8 Strain EN1660.
Perry BJ, Fitzgerald SF, Kröger C, Cameron AD.
Genome Announc. 2017 Jan 26;5(4). pii: e01517-16. doi: 10.1128/genomeA.01517-16.

Genetic Regulation of Virulence and Antibiotic Resistance in Acinetobacter baumannii.
Kröger C, Kary SC, Schauer K, Cameron AD.
Genes (Basel). 2016 Dec 28;8(1). pii: E12. doi: 10.3390/genes8010012. Review.

The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium.
Colgan AM, Kröger C, Diard M, Hardt WD, Puente JL, Sivasankaran SK, Hokamp K, Hinton JC.
PLoS Genet. 2016 Aug 26;12(8):e1006258. doi: 10.1371/journal.pgen.1006258.

Bistable expression of CsgD in Salmonella enterica serovar Typhimurium connects virulence to persistence.
MacKenzie KD, Wang Y, Shivak DJ, Wong CS, Hoffman LJ, Lam S, Kröger C , Cameron AD, Townsend HG, Köster W, White AP.
Infect Immun. 2015 Jun;83(6):2312-26. doi: 10.1128/IAI.00137-15. Epub 2015 Mar 30.

The orphan regulator ReiD of Salmonella enterica is essential for myo -inositol utilization.
Rothhardt JE, Kröger C, Broadley SP, Fuchs TM.
Mol Microbiol. 2014 Nov;94(3):700-12. doi: 10.1111/mmi.12788. Epub 2014 Oct 6.

Transmission of an oxygen availability signal at the Salmonella enterica serovar Typhimurium fis promoter.
Cameron AD, Kröger C, Quinn HJ, Scally IK, Daly AJ, Kary SC, Dorman CJ.
PLoS One. 2013 Dec 16;8(12):e84382. doi: 10.1371/journal.pone.0084382. eCollection 2013.

sRNAs and the virulence of Salmonella enterica serovar Typhimurium.
Hébrard M, Kröger C, Srikumar S, Colgan A, Händler K, Hinton JC.
RNA Biol. 2012 Apr;9(4):437-45. doi: 10.4161/rna.20480. Epub 2012 Apr 1. Review.

The challenge of relating gene expression to the virulence of Salmonella enterica serovar Typhimurium.
Hébrard M, Kröger C, Sivasankaran SK, Händler K, Hinton JC.
Curr Opin Biotechnol. 2011 Apr;22(2):200-10. doi: 10.1016/j.copbio.2011.02.007. Epub 2011 Mar 22. Review.

Bistability in myo -inositol utilization by Salmonella enterica serovar Typhimurium.
Kröger C*, Srikumar S*, Ellwart J, Fuchs TM.
J Bacteriol. 2011 Mar;193(6):1427-35. doi: 10.1128/JB.00043-10. Epub 2011 Jan 14.
*contributed equally

myo -Inositol transport by Salmonella enterica serovar Typhimurium.
Kröger C, Stolz J, Fuchs TM.
Microbiology. 2010 Jan;156(Pt 1):128-38. doi: 10.1099/mic.0.032250-0. Epub 2009 Oct 15.

Characterization of the myo -inositol utilization island of Salmonella enterica serovar Typhimurium.
Kröger C, Fuchs TM.
J Bacteriol. 2009 Jan;191(2):545-54. doi: 10.1128/JB.01253-08. Epub 2008 Nov 14.

Escherichia coli twin arginine (Tat) mutant translocases possessing relaxed signal peptide recognition specificities.
Kreutzenbeck P, Kröger C, Lausberg F, Blaudeck N, Sprenger GA, Freudl R.
J Biol Chem. 2007 Mar 16;282(11):7903-11. Epub 2007 Jan 16.