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Batke, S.P., Jocque, M., Kelly, D.L. , Modelling Hurricane Exposure and Wind Speed on a Mesoclimate Scale: A Case Study from Cusuco NP, Honduras. , PLoS ONE , 9, (3), 2014, p11

Boonsuk B, Chantaranothai P, Hodkinson TR, A new species and two new taxon records of Digitaria (Poaceae: Panicoideae) for Thailand, Phytotaxa, 161, (4), 2014, p283 – 288

Breeze TD, Vaissière BE, Bommarco R, Petanidou T, Seraphides N, Kozák L, Scheper J, Biesmeijer JC, Kleijn D, Gyldenkærne S, Moretti M, Holzschuh A, Steffan-Dewenter I, Stout JC, Pärtel M, Zobel M, Potts SG, Agricultural policies exacerbate honeybee pollination service supply-demand mismatches across europe., PloS one, 9, (1), 2014, pe82996

Buttler, C.J., Popov, L., Ghobadi Pour, M. and Wyse Jackson, P.N. Early Silurian (Aeronian) silicified bryozoans from Central Iran, International Bryozoology Association Larwood Symposium, Institute of Oceanology, Polish Academy of Sciences, Sopot, Poland, 12-13 July 2014, edited by Piotr Kuklinski , Polish Academy of Sciences, 2014, pp12-

Challoner A., Gill L.W. Indoor/outdoor air pollution ratios in ten commercial buildings: PM2.5 and NOx., Buildings and Environment , 80, 2014, p159 - 173

Curneen S., Gill L.W., A comparison of the suitability of different willow varieties to treat on-site wastewater effluent in an Irish climate. , Journal of Environmental Management, 133, 2014, p153 – 161

Dauber J, Cass S, Gabriel D, Harte K, Åström S, O’Rourke E & Stout JC (In press) Yield-biodiversity trade-off in fields of Miscanthus x giganteus. Global Change Biology Bioenergy


Davies, A.R. and Doyle, R., Shiftshaping: exploring practice-oriented participatory backcasting for imagining socio-ecological transformation of household consumption, The Annals of the Association of American Geographers, 2015

Davies, A.R., Fahy, F., and Rau, R. Challenging Consumption: Pathways to a more Sustainable Future , London, Routledge, 2014

Davies, A.R., Devaney, L., Pape, J. Sustainable eating: visions, practices and the role of technology in, editor(s)Anna R. Davies, Frances Fahy, Henrike Rau , Challenging Consumption: pathways to a more sustainable future, London, Routledge, 2014,

Davies, A.R., Fahy, F., and Rau, R. Introduction: Challenging Consumption in, editor(s)Anna R. Davies, Frances Fahy, Henrike Rau , Challenging Consumption: pathways to a more sustainable future, London, Routledge, 2014, URL

Davies, A.R., Technology and sustainable urban food futures: views from the kitchen, Futures:The journal of policy, planning and futures studies, 2014

Davies, A.R. Environmental Futures, in The International Encyclopedia of Geography: People, the Earth, Environment, and Technology, 2014 TARA - Full Text

Dold, C. and Holland, C.V., Ascaris lumbricoides, Encyclopedia of Food Safety (FOSA), edited by Yasmine Motarjemi, Gerald Moy and Ewen Todd, Volume 3, Elsevier, 2014, pp82 – 89

Dubber D., Gill L.W., Pilla F., Smyth D., Qazi N., McCarthy T. , Development of a GIS based decision support toolset to assess the feasibility of on-site wastewater treatment and disposal options in low permeability subsoils., Water Science and Technology, in press, 2014

Dubber D., Gill L.W., Application of On-Site Wastewater Treatment in Ireland and Perspectives on Its Sustainability, Sustainability, 6, 2014, p1623 - 1642

Evtimova, VV & Donohue, I, Quantifying ecological responses to amplified water level fluctuations in standing waters: an experimental approach, Journal of Applied Ecology, in press, 2014

Fahey C, Byrne S, McLaughlin R, Kenna K, Shatunov A, Donohoe G, Gill M, Al-Chalabi A, Bradley DG, Hardiman O, Corvin AP, Morris DW, Analysis of the hexanucleotide repeat expansion and founder haplotype at C9ORF72 in an Irish psychosis case-control sample., Neurobiology of aging, 2014

Fryer, M. and Gray, N.F., New study aims to develop a knowledge-based risk assessment model to predict risk and severity of activated sludge foaming., EverythingAboutWater (India), 2014

Gallagher, J., Gill, L.W., McNabola, A., Passive Control of Air Pollution Exposure in Dublin, Ireland: A Combined Measurement and Modelling Case Study, Transport Research Board, Washington USA, 2014, pp1-8

García-Molinos, J. & Donohue, I., Downscaling the non-stationary effect of climate forcing on local-scale dynamics: The importance of environmental filters, Climatic Change, 124, 2014, p333 – 346

Gerbault, P, Allaby, RG, Boivin, N, Rudzinski, A, Grimaldi, IM, Pires, JC, Vigueira, CC, Dobney, K, Gremillion, KJ, Barton, L, Arroyo-Kalin, M, Purugganan, MD, de Casas, RR, Bollongino, R, Burger, J, Fuller, DQ, Bradley, DG, Balding, DJ, Richerson, PJ, Gilbert, MTP, Larson, G, Thomas, MG, Storytelling and story testing in domestication, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 111, (17), 2014, p6159-6164

Gill L.W., Keegan M., Dubber D., Misstear B.D.R., Johnston P.M., Determining the minimum subsoil permeability for pressurised infiltration systems for on-site wastewater treatment in Ireland., Soil Science Society of America specialist conference: Innovation in soil based wastewater treatment. , Albuquerque, New Mexico, 7th- 8th April, 2014, pp1 - 8

Gill L.W., Curneen S., Dubber D., Willow based evapotranspiration systems for the on-site treatment of domestic wastewater in areas of low permeability subsoils. , Soil Science Society of America specialist conference: Innovation in soil based wastewater treatment., Albuquerque, New Mexico, 7th- 8th April, 2014, pp1 - 8

Gill, L.W., Morrissey P., Johnston P.M. , The dispersion of domestic on-site wastewater effluent by groundwater downstream of cluster developments., Dooge-Nash International Symposium, Dublin Castle, Dublin , 24th- 25th April, 2014, pp131 – 142

Gill L.W., Ring, P., Higgins N., Johnston P.M. , Accumulation of heavy metals in a constructed wetland treating road runoff., Ecological Engineering , 70, 2014, p133 – 139

Głowacka K, Clark LV , Adhikari S, Peng J , Stewart JR , Nishiwaki A, Yamada T, Jørgensen U, Hodkinson TR , GiffordJ , Juvik JA, Sacks EJ, Genetic variation in Miscanthus ×giganteus and the importance of estimating genetic distance thresholds for differentiating clones, GCB Bioenergy, 2014

Gray, N.F., Capillary suction time (CST) in, editor(s)S. Tarleton , Filtration and Separation, Chichester, Elsevier, 2014, pp 1.2.3: 1 - 10

Gray, N.F., Pathogen control in drinking water in, editor(s)S.L.Percival, M.V. Yates, D.W. Williams, R.M. Chalmers and N.F. Gray , Microbiology of Waterborne Diseases: Microbiological Aspects and Risk, London, Academic Press, 2014, pp537 - 570

Gray, N.F., Free and combined chlorine in, editor(s)S.L.Percival, M.V. Yates, D.W. Williams, R.M. Chalmers and N.F. Gray , Microbiology of Waterborne Diseases: Microbiological Aspects and Risk, London, Academic Press, 2014, pp571 - 590

Gray, N.F., Chlorine dioxide in, editor(s)S.L.Percival, M.V. Yates, D.W. Williams, R.M. Chalmers and N.F. Gray , Microbiology of Waterborne Diseases: Microbiological Aspects and Risk, London, Academic Press, 2014, pp591 - 598

Gray, N.F., Ozone disinfection in, editor(s)S.L.Percival, M.V. Yates, D.W. Williams, R.M. Chalmers and N.F. Gray , Microbiology of Waterborne Diseases: Microbiological Aspects and Ris, London, Academic Press, 2014, pp599 – 616

Gray, N.F., Ultraviolet disinfection in, editor(s)S.L.Percival, M.V. Yates, D.W. Williams, R.M. Chalmers and N.F. Gray , In Microbiology of Waterborne Diseases: Microbiological Aspects and Risk, London, Academic Press, 2014, pp617 – 630

Gray, N.F., Filtration methods in, editor(s)S.L.Percival, M.V. Yates, D.W. Williams, R.M. Chalmers and N.F. Gray , Microbiology of Waterborne Diseases: Microbiological Aspects and Risk, London, Academic Press, 2014, pp631 – 652

Gray, N.F., The implications of global warming and climate change on waterborne diseases in editor(s)S.L.Percival, M.V. Yates, D.W. Williams, R.M. Chalmers and N.F. Gray , Microbiology of Waterborne Diseases: Microbiological Aspects and Risk, London, Academic Press, 2014, pp653 – 666

Hamilton, Clare M., Yoshida, A., Pinelli, E and Holland, C.V. Toxocariasis in, editor(s)F. Bruschi , Helminth infections and their impact on global public health, Vienna, Springer, 2014, pp425 - 460,

Healy, K. Finlay, S., Guillerme, T., Kane, A., Kelly, S.B.A., McClean, D., Kelly, D.J., Donohue, I., Jackson, A.L. & Cooper, N., Ecology and mode-of-life explain lifespan variation in birds and mammals, Proceedings of the Royal Society Series B, 281, (1784), 2014

Henrike Rau, Anna R. Davies, Frances Fahy] Conclusion: Moving on: promising pathways to more sustainable futures in, editor(s)Anna R. Davies, Frances Fahy and Henrike Rau , Challenging Consumption:Pathways to a more Sustainable Future, London, Routledge, 2014,

Hynds P.D., Misstear B.D.R., Gill L.W., Murphy H.M.  Groundwater source contamination mechanisms: Physicochemical profile clustering, risk factor analysis and multivariate modelling., Journal of Contaminant Hydrology , 159, 2014, p47 – 56

Hynds P.D., Misstear B.D.R., Gill L.W., A quantitative risk assessment of Verotoxigenic producing E. coli (VTEC) in private groundwater sources in the Republic of Ireland. , Human and Ecological Risk Assessment , 20, 2014, p1446 - 1468

Irwin, S., Pedley, S., Coote, L., Dietzsch, A., Wilson, M., Oxbrough, A., Sweeney, O., Moore, K., Martin, R., Kelly, D., Mitchell, F. J. G., Kelly, T. & O’Halloran, J., The value of plantation forests for plant, invertebrate and bird diversity and the potential for cross-taxon surrogacy, Biodiversity and Conservation, 23, (3), 2014, p697 - 714

Jennings, E., Allott, N., Lenihan, D, Drivers of long-term trends and seasonal changes in total phosphorus loads to a mesotrophic lake in the west of Ireland, Marine and Freshwater Research, 64, (5), 2013, p413 – 422

Keegan M., Kilroy K., Gill L.W., Nolan D., O’Flaherty V., Dubber D., Johnston P.M., Misstear B.D.R., Barrett M., Assessment of the impact of traditional septic tank soakaway systems on water quality in Ireland. , Water, Science and Technology, 2014

Kelly SBA, Kelly DJ, Cooper N, Bahrun A, Analuddin K, Marples NM, Molecular and Phenotypic Data Support the Recognition of the Wakatobi Flowerpecker (Dicaeum kuehni) from the Unique and Understudied Sulawesi Region, PLoS ONE, 9, (6), 2014, e98694- Notes: [doi:10.1371/journal.pone.0098694] TARA - Full Text  URL

Larson, G., Bradley, D.G., How Much Is That in Dog Years? The Advent of Canine Population Genomics, PLoS Genetics, 10, (1), 2014, pe1004093-

Lenstra, J.A., Ajmone-Marsan, P., Beja-Pereira, A., Negrini, R., Radoslavov, G.A. , Meta-Analysis of mitochondrial DNA reveals several population bottlenecks during worldwide migrations of cattle , Diversity, 6, (1), 2014, p178-187

McMahon, K., Conboy, A., O'Byrne-White, E., Thomas, R.J., & Marples N.M., Dietary wariness influences the response of foraging birds to competitors, Animal Behaviour , 89, 2014, p63 - 69

McCormack T., Gill L.W., Naughton O., Johnston P.M., Quantification of submarine/intertidal groundwater discharge and nutrient loading from a lowland karst catchment., Journal of Hydrology, 2014

McGrath S, Hodkinson TR, Frohlich A, Grant J, Barth S, Seasonal and genetic variations in water-soluble carbohydrates and other quality traits in ecotypes and cultivars of perennial ryegrass (Lolium perenne L.), Plant Genetic Resources: Characterization and Utilization, doi:10.1017/S1479262, 2014, p1 - 12

McLaughlin RL, Kenna KP, Vajda A, Byrne S, Bradley DG, Hardiman O, UBQLN2 mutations are not a frequent cause of amyotrophic lateral sclerosis in Ireland., Neurobiology of aging, 35, (1), 2014, p267.e9-11

Mitchell, F. J. G., Reprint of “Long-term changes and drivers of biodiversity in Atlantic oakwoods”, Forest Ecology and Management, 321, 2014, p130 – 135

Murphy BR, Doohan FM, Hodkinson TR, Yield increase induced by the fungal root endophyte Piriformospora indica in barley grown at low temperature is nutrient limited, Symbiosis, 2014

Newman, M., Mitchell, F. J. G., Kelly, D. L., Exclusion of large herbivores: Long-term changes within the plant community, Forest Ecology and Management, 321, 2014, p136 - 144

O'Brien R.J., Misstear B.D.R., Gill L.W., Johnston P.M., Flynn R. , Quantifying flows along hydrological pathways by applying a new filtering algorithm in conjunction with master recession curve analysis. , Hydrological Processes Journal , 2014

O'Rourke AT, Fitzpatrick U, Stout JC (2014) Spring foraging resources and the behaviour of pollinating insects in fixed dune ecosystems. 2014 13:161-173

Percival, S.L., Yates, M.V., Williams, D.W., Chalmers, R.M. and Gray,N.F. , Microbiology of Waterborne Diseases: Microbial Aspects and Risks. , London, Academic Press, 2014, 1 - 695pp

Purfield, DC, Bradley, DG, Kearney, JF, Berry, DP, Genome-wide association study for calving traits in Holstein-Friesian dairy cattle, ANIMAL, 8, (2), 2014, p224-235

Richards E.L., Alexander L.G., Snellgrove D., Thomas R.J., Marples N.M. & Cable J., Variation in the expression of dietary conservatism within and between fish species, Animal Behaviour , 88, 2014, p49 – 56

Roth, B., Finnan, J., Jones, M.B., Burke, J.L. and Williams, M.L., Are the benefits of yield responses to nitrogen fertiliser application in the bioenergy crop Miscanthus x giganteus offset by increased soil emissions of nitrous oxide, Global Change Biology Bioenergy, doi: 10.1111/gcbb.12, 2014

Shrestha S, Abdalla M, Hennessy T, Forristal D, Jones MB, Irish farms under climate change - is there a regional variation on farm reponses?, Journal of Agricultural Science, 2014, p14

Soh WK, von Sternburg M, Hodkinson TR, Parnell JAN, Buxus sirindhorniana sp. nov. (Buxaceae), a bicarpellate species from Thailand, Nordic Journal of Botany, 2014

Stanley DA, Stout JC, Pollinator sharing between a mass flowering entomophilous bioenergy crop (oilseed rape) and co-flowering wild plants, Plant Ecology, 215, 2014, p315-325

Stout JC, Anthropogenic impacts on pollination networks and plant mating systems, Functional Ecology, 28, 2014, p1 - 2

Stout JC, Casey LE, Relative abundance of an invasive alien plant affects insect-flower interaction networks in Ireland, Acta Oecologica, 55, 2014, p78 - 85

Suárez Andrés, J.L.  & Wyse Jackson, P.N., Ernstipora mackinneyi, a new unique fenestrate bryozoan genus and species with an encrusting growth habit from the Emsian (Devonian) of NW Spain. , Neues Jahrbuch für Geologie und Paläontologie Abhandlungen, 271, (3), 2014, p229 - 242

Tiedeken EJ, Stout JC, Stevenson PC, Wright GA, The bumblebee Bombus terrestris has poor acuity for the detection of toxins in nectar, Journal of Experimental Biology, 217, 2014, p1620-1625

Thomasset M, Hodkinson TR, Restoux, G, Frascaria-Lacoste N, Douglas GC, Fernandez-Manjarres, JF, Thank you for not flowering: conservation genetics and gene flow analysis of native and non-native populations of Fraxinus (Oleaceae) in Ireland, Heredity, 2014

Utsunomiya, YT, Bomba, L, Lucente, G, Colli, L, Negrini, R, Lenstra, JA, Erhardt, G, Garcia, JF, Ajmone-Marsan, P, European Cattle Genetic Diversity, Revisiting AFLP fingerprinting for an unbiased assessment of genetic structure and differentiation of taurine and zebu cattle, BMC GENETICS, 15, 2014

Wyse Jackson, P.N., Kelso, A. & Sun, K. Late Pleistocene mammalian bones as substrates for encrusting Recent bryozoans, Brown Bank, North Sea. , International Bryozoology Association Bulletin, 10, (1), 2014, p8 - 10

Wyse Jackson, P.N., Key, M.M. and Coakley, S.P. Epizoozoan trepostome bryozoans on nautiloids from the Upper Ordovician (Katian) of the Cincinnati Arch Region, U.S.A.: an assessment of growth, form and water flow dynamics, Journal of Paleontology, 88, (3), 2014, p475 - 487

Wyse Jackson, P.N., Irish 'Rock Stars': Alexander Nimmo (1783–1832), Earth Science Ireland, 15, 2014, p14-

Wyse Jackson, P.N., William King and his pioneering studies of Permian bryozoans, From fossils to the genome: the 150th anniversary of the maining of Homo neanderthalensis by William King, National University of Ireland, Galway, 23-25 May 2014, edited by John Murray , NUI Galway, 2014

Wyse Jackson, P.N., Handedness in Rhabdomeson (Cryptostomata: Bryozoa) from the Mississippian of the UK and patterns of cyclical and spiral budding, International Bryozoology Association Larwood Symposium, Institute of Oceanology, Polish Academy of Sciences, Sopot, Poland, 12-13 July 2014, edited by Piotr Kuklinski , Polish Academy of Sciences, 2014



Abanyie, F.A., McCracken, C., Kirwan, P., Molloy, S.F., Asaolu, S.O., Holland, C.V., Gutman, J. and Lamb, T.J. (2013). Ascaris co-infection does not alter malaria-induced anaemia in a cohort of Nigerian preschool children. Malaria Journal 12:1.

Bourke D, Stanley D, O’Rourke E, Thompson R, Carnus T, Dauber J, Emmerson M, Whelan P, Hecq F, Fynn E, Dolan L & Stout JC (2013) Response of farmland biodiversity to the introduction of bioenergy crops: effects of local factors and surrounding landscape context. Global Change Biology Bioenergy

Charman, D. J., Beilman, D. W., Blaauw, M., Booth, R. K., Brewer, S., Chambers, F. M., Christen, J. A., Gallego-Sala, A., Harrison, S. P., Hughes, P. D. M., Jackson, S. T., Korhola, A., Mauquoy, D., Mitchell, F. J. G., Prentice, I. C., van der Linden, M., De Vleeschouwer, F., Yu, Z. C., Alm, J., Bauer, I. E., Corish, Y. M. C., Garneau, M., Hohl, V., Huang, Y., Karofeld, E., Le Roux, G., Loisel, J., Moschen, R., Nichols, J. E., Nieminen, T. M., MacDonald, G. M., Phadtare, N. R., Rausch, N., Sillasoo, Ü., Swindles, G. T., Tuittila, E. S., Ukonmaanaho, L., Väliranta, M., van Bellen, S., van Geel, B., Vitt, D. H. & Zhao, Y.  (2013) Climate-related changes in peatland carbon accumulation during the last millennium. Biogeosciences 10, 929-944.

Christin P-A, Osborne CP, Chatelet DS, Columbus JT, Besnard G, Hodkinson TR, Garrison LM, Vorontsova MS, Edwards EJ, (2013) Anatomical enablers and the evolution of C4 photosynthesis in grasses, Proceedings of the National Academy of Sciences USA, 110: 1381-1386

Chrysoulakis, N., Lopes, M., San José, R., Grimmond, C.S.B., Jones, M.B., Magliulo, V., Klostermann, J.E., Synnefa, A., Mitraka, Z., Castro, E.A., González, A.,Vogt, R., Vesala, T., Spano, D., Pigeon, G., Freer-Smith, P., Staszewski, T., Hodges, N., Mills, G. & Cartalis C. (2013). Sustainable urban metabolism as a link between bio-physical sciences and urban planning: The BRIDGE project. Landscape and Urban Planning. 112: 100–117

Cooper, N., & Nunn, C.L. 2013. Identifying future zoonotic disease threats: Where are the gaps in our understanding of primate infectious diseases? Evolution, Medicine and Public Health. 2013, 26-37

Coote L, Dietzsch AC, Wilson MW, Graham CT, Fuller L, Walsh AT, Irwin S, Kelly DL, Mitchell FJG, Kelly TC, O’Halloran J (2013). Testing indicators of biodiversity for plantation forests, Ecological Indicators, 32:107-115.

Davies AR (2013). Social groups and collective decision-making: Focus Group approaches. In Fahy F, Rau H (eds), Methods for Sustainability Research in the Social Sciences, Sage: London, pp53-71.

Davies AR (2013). When clean and green meets the Emerald Isle: contrasting waste governance narratives in Ireland and New Zealand. In, editor(s)Zapata M, Hall, M (eds), Organising Waste in the City, The Policy Press: London, pp63 - 82.

Devoy JK, Holland CV (2013). A comparison of Toxocara canis embryonation under controlled conditions in soil and hair, Journal of Helminthology, 87: 78-84.

Donohue, I., Petchey, O.L., Montoya, J.M., Jackson, A.L., McNally, L., Viana, M., Healy, K., Lurgi, M., O’Connor, N.E. & Emmerson, M.C. 2013. On the dimensionality of ecological stability. Ecology Letters, 16, 421-429.

Doyle R, Davies AR (2013). Future visions for sustainable household practices in Ireland: creating and assessing sustainable home heating scenarios, Journal of Cleaner Production, 48: 260-271.

Gautier TG, Wyse Jackson PN, McKinney FK (2013). Adlatipora, a distinctive new acanthocladiid bryozoan from the Permian of the Glass Mountains, Texas, U.S.A., and its bearing on fenestrate astogeny and growth, Journal of Paleontology , 87(3): 444-455.

González, A., Donnelly, A., Jones, M., Chrysoulakis, N. & Lopes, M. (2013). A decision-support system for sustainable urban metabolism in Europe. Environmental Impact Assessment Review. 38: 109–119

Gray NF (2013). Pathogen control in drinking water. In PercivalS, Gray NF, R. Chalmers R, Sellwood J (eds), Microbiology of Waterborne Diseases: Microbiological Aspects and Risk, Academic Press: London, pp1-32.

Healy, K., McNally, L., Ruxton, G.D., Cooper, N. & Jackson, A.L. (2013). Metabolic rate and body size linked with perception of temporal information. Animal Behaviour.

Holland C (2013) Ascaris the neglected parasite. First edition. Elsevier.

Kamilar, J.M. & Cooper, N. 2013. Phylogenetic signal in primate behaviour, ecology, and life history. Philosophical Transactions of the Royal Society Series B: Biological Sciences. 368, 20120341

Kenna KP, Mclaughlin RL, Hardiman O, Bradley DG (2013). Using reference databases of genetic variation to evaluate the potential pathogenicity of candidate disease variants, Human Mutation, 34(6): 836-841.

Lapple D, Hennessy T, Newman C (2013). Quantifying the economic return to participatory extension programmes in Ireland: An endogenous switching regression analysis, Journal of Agricultural Economics, 64(2): 467-482.

McNabola A, O'Luanaigh N, Gallagher J, Gill LW (2013). The development and assessment of an Aspiration Efficiency Reducing system of air pollution control for particulate matter, Energy and Buildings, 61: 177-184.

McNally, L., Brown, S. P. & Jackson, A. L. (2013) Cooperation and the evolution of intelligence. Proceedings of the Royal Society of London B.

McNally, L., Jackson, A.L. 2013. Cooperation creates selection for tactical deception. Proceedings of the Royal Society of London B, 280.

Mitchell F.J.G., Stefanini, B.S. and Marchant, R. (2013) A catalogue of Irish pollen diagrams. Biology and Environment-Proceedings of the Royal Irish Academy, 113B(1),

Mullen, E.M., MacWhite, T., Maher, P., Kelly, D.J., Good, M., Marples, N.M. (2013) Foraging Eurasian badgers Meles meles and the presence of cattle in pastures. Do badgers avoid cattle? Applied Animal Behaviour Science 144: 130–137

Noone C, Parkinson M, Dowling DJ, Aldridge A, Kirwan P, Molloy SF, Asaolu SO, Holland CV, O'Neill S (2013). Plasma cytokines, chemokines and cellular immune responses in preschool Nigerian children infected with Plasmodium falciparum, Malaria Journal, 12(5).

O'Brien RJ, Misstear BDR, Gill LW, Deakin J (2013). Applying an integrated hydrograph separation and lumped modelling approach to quantifying flow pathways in Irish river catchments, Journal of Hydrology , 486: 259-270.

O’Connor NE & Donohue I (2013). Environmental context determines the multi-trophic effects of consumer species loss. Global Change Biology. 19: 431–440

O’Connor NE, Emmerson MC, Crowe TP & Donohue I. (2013). Distinguishing between direct and indirect effects of predators in complex ecosystems. Journal of Animal Ecology. 82: 438–44

Parnell, A.C., Phillips, D.L., Bearhop, S., Semmens, B.X., Ward, E.J., Moore, J.W., Jackson, A.L. & Inger, R. (2013). Bayesian stable isotope mixing models. Environmetrics.

Patrick, S.C., Péron, C., Soanes, L., Wanless, S., Votier, S.C., & Hamer, K.C. 2013. Space Partitioning Without Territoriality in Gannets. Science.

Perrin, P. M. & Mitchell, F. J. G. (2013) Effects of shade on growth, biomass allocation and leaf morphology in European yew (Taxus baccata L.). European Journal of Forest Research, 132

Power EF, Kelly DL, Stout JC (2013) Impacts of organic and conventional dairy farmer attitude, behaviour and knowledge on farm biodiversity in Ireland. Journal for Nature Conservation.

Power EF, Kelly DL & Stout JC (2013) The impacts of traditional and novel herbicide application methods on target plants, non-target plants and production in intensive grasslands. Weed Research 53: 131-139

Smith RJ,  Waldren S (2013). Gynodioecy in Campanula trachelium L., New Journal of Botany.

Stanley DA, Knight ME & Stout JC (2013) Ecological variation in response to mass-flowering oilseed rape and surrounding landscape composition by members of a cryptic bumblebee complex. PLoS ONE

Stanley DA, Stout JC (2013) Quantifying the impacts of bioenergy crops on pollinating insect abundance and diversity: a field scale evaluation reveals taxon-specific responses. Journal of Applied Ecology 50: 335–344

Stevens, M. Marshall, K.L.A., Troscianko, J., Finlay, S., Burnand, D., Chadwick, S.L. (2013) Revealed by conspicuousness: distractive markings reduce camouflage. Behavioural Ecology. 24, 213-222.

Stevens, M., Marshall, K.L.A., Troscianko, J., & Finlay, S. (2013). What is camouflage through distractive markings? A reply to Merilaita et al. (2013). Behavioural Ecology.

Stevenson A, Rocha C (2013)., Evidence for the bioerosion of deep-water corals by echinoids in the Northeast Atlantic, Deep-Sea Research, 71: 73-78.

Thomasset M, Fernández-Manjarrés JF, Douglas GC, Bertolino P, Frascaria-Lacoste N, Hodkinson TR (2013) Assignment testing reveals multiple introduced source populations including potential ash hybrids (Fraxinus excelsior x F. angustifolia) in Ireland, European Journal of Forest Research, 132:195 - 209

Ugoletti P, Reidy D, Jones, MB & Stout JC (2013) Do native bees have the potential to promote interspecific pollination in introduced Impatiens species? Journal of Pollination Ecology 11: 1-8

Viana, M., Jackson, A.L., Graham, N. & Parnell, A.C. 2013. Disentangling spatio-temporal processes in a hierarchical system: a case study in fisheries data. Ecography, 36(5), 569-578



Abdalla, M., Rueangritsarakul, K., Jones, M., Osborne, B., Helmy, M., Roth, B., Burke, J., Nolan, P., Smith, P and Williams, M. (2012) How Effective is Reduced Tillage-Cover Crop Management in Reducing N2O Fluxes from Arable Crop Soils? Water, Air and Soil Pollution 223: 5155-5174

BONE, R. E., STRIJK, J. S., FRITSCH, P. W., BUERKI, S., STRASBERG, D., THEBAUD, C. & HODKINSON, T. R. 2012. Phylogenetic inference of Badula (Primulaceae), a rare and threatened genus endemic to the Mascarene Archipelago. Botanical Journal of the Linnean Society, 169, 284-296.

Charman DJ, Hohl V, Blundell A, Mitchell FJG and Oksanen P (2012). A 1000-year reconstruction of summer precipitation from Ireland: calibration of a peat-based palaeoclimate record. Quaternary International, 268: 87-97.

Cooper, N., Griffin, R., Franz, M., Omotayo, M., & Nunn, C.L. 2012. Phylogenetic host specificity and understanding parasite sharing in primates. Ecology Letters. 15, 1370-1377.

Cooper, N., Kamilar, J.M., & Nunn, C.L. 2012. Host longevity and parasite species richness in mammals. PLoS ONE. 7, e42190

Coote L, French LJ, Moore K, Mitchell, FJG and Kelly DL (2012). Can forestry plantations support plant species and communities of semi-natural woodland? Forest Ecology and Management, 283: 86-95.

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PARNELL, J. & CURTIS, T. 2012. Webb’s An Irish Flora. Cork University Press, Cork. 504 + LVI pp.

PARNELL, J. 2012. Aeginetia flava: a new and remarkable species of Aeginetia: Orobanchaceae from southeastern Thailand. Kew Bulletin, 67, 1-4.

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WILSON, J. & ROCHA, C. 2012. Regional scale assessment of Submarine Groundwater Discharge in Ireland combining medium resolution satellite imagery and geochemical tracing techniques. Remote Sensing of Environment, 119, 21-34.


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CAFFARRA, A. & DONNELLY, A. 2011. The ecological significance of phenology in four different tree species: effects of light and temperature on bud burst. International Journal of Biometeorology, 55, 711-721.

CAFFARRA, A., DONNELLY, A. & CHUINE, I. 2011. Modelling the timing of Betula pubescens budburst. II. Integrating complex effects of photoperiod into process-based models. Climate Research, 46, 159-170.

CAFFARRA, A., DONNELLY, A., CHUINE, I. & JONES, M. B. 2011. Modelling the timing of Betula pubescens budburst. I. Temperature and photoperiod: a conceptual model. Climate Research, 46, 147-157.

CARROLL, J., NEWMAN, C. & THORNE, F. 2011. A comparison of stochastic frontier approaches for estimating technical inefficiency and total factor productivity. Applied Economics, 43, 4007-4019.

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CUNHA PEREIRA, H., ALLOTT, N., COXON, C., NAUGHTON, O., JOHNSTON, P. & GILL, L. 2011. Phytoplankton of turloughs (seasonal karstic Irish lakes). Journal of Plankton Research, 33, 385-403.

Cunningham, Francis; Menezes, Fabio S. 2011. Ethnopharmacology in Dublin: surveys on the medicinal plants use profile. REVISTA BRASILEIRA DE FARMACOGNOSIA-BRAZILIAN JOURNAL OF PHARMACOGNOSY 21, (5), 814-817.

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DELETRE, M., MCKEY, D. B. & HODKINSON, T. R. 2011. Marriage exchanges, seed exchanges, and the dynamics of manioc diversity. Proceedings of the National Academy of Sciences of the United States of America, 108, 18249-18254.

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DONNELLY, A., O'NEILL, B. F., CAFFARRA, A. & SCHWARTZ, M. D. 2011. Special Issue, Phenology 2010 Conference, Dublin, Ireland. International Journal of Biometeorology, 55, 751-752.

DONNELLY, A., STYLES, D., FITZGERALD, J. & FINNAN, J. 2011. A proposed framework for determining the environmental impact of replacing agricultural grassland with Miscanthus in Ireland. Global Change Biology Bioenergy, 3, 247-263.

DUBBER, D. & GRAY, N. F. 2011. The effect of anoxia and anaerobia on ciliate community in biological nutrient removal systems using laboratory-scale sequencing batch reactors (SBRs). Water Research, 45, 2213-2226.

DUBBER, D. & GRAY, N. F. 2011. The influence of fundamental design parameters on ciliates community structure in Irish activated sludge systems. European Journal of Protistology, 47, 274-286.

DUFFY, K. & STOUT, J. 2011. Effects of conspecific and heterospecific floral density on the pollination of two related rewarding orchids. Plant Ecology, 212, 1397-1406.

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ERDOGAN, E., POPOV, I., ROCHA, C. G., CUNIBERTI, G., ROCHE, S. & SEIFERT, G. 2011. Engineering carbon chains from mechanically stretched graphene-based materials. Physical Review B, 83.

GILL, L. W. 2011. The development of a Code of Practice for single house on-site wastewater treatment in Ireland. Water Science and Technology, 64, 677-683.

GILL, L. W., O'LUANAIGH, N. & JOHNSTON, P. M. 2011. On-site wastewater treatment using subsurface flow constructed wetlands in Ireland. Journal of Environmental Science and Health Part a-Toxic/Hazardous Substances & Environmental Engineering, 46, 723-728.

GODEFROID, S., RIVIERE, S., WALDREN, S., BORETOS, N., EASTWOOD, R. & VANDERBORGHT, T. 2011. To what extent are threatened European plant species conserved in seed banks? Biological Conservation, 144, 1494-1498.

GONZÁLEZ, A., DONNELLY, A., JONES, M., KLOSTERMANN, J., GROOT A. & BREIL, M. (2011). Community of practice approach to developing urban sustainability indicators. Journal of Environmental Assessment Policy and Management, 13(4) 591-617.

HODKINSON, T. R. 2011. Climate change, ecology and systematics, Cambridge Univ Press.

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JACKSON, A. L., INGER, R., PARNELL, A. C. & BEARHOP, S. 2011. Comparing isotopic niche widths among and within communities: SIBER - Stable Isotope Bayesian Ellipses in R. Journal of Animal Ecology, 80, 595-602.

JACKSON A.L.R. 2011. Renewable energy vs. biodiversity: Policy conflicts and the future of nature conservation. Global Environmental Change, 21, 1195

JONES K., JACKSON, A.L. & RUXTON, G.D. 2011. Prey jitters; protean behaviour in grouped prey. Behavioral Ecology, 22, 831-836.

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MITCHELL, F. J. G. 2011. Exploring vegetation in the fourth dimension. Trends in Ecology & Evolution, 26, 45-52.

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WESTPHAL, C., ZOBEL, M. & WALTHER, G.-R. 2011. Alien plants associate with widespread generalist arbuscular mycorrhizal fungal taxa: evidence from a continental-scale study using massively parallel 454-sequencing. Journal of Biogegraphy, 38, 1305-1317.

O'CONNOR, N. E., DONOHUE, I., CROWE, T. P. & EMMERSON, M. C. 2011. Importance of consumers on exposed and sheltered rocky shores. Marine Ecology-Progress Series, 443, 65-75.

O'REILLY, J., VINTRO, L. L., MITCHELL, P. I., DONOHUE, I., LEIRA, M., HOBBS, W. & IRVINE, K. 2011. Pb-210-dating of a lake sediment core from Lough Carra (Co. Mayo, western Ireland): use of paleolimnological data for chronology validation below the Pb-210 dating horizon. Journal of Environmental Radioactivity, 102, 495-499.

PARNELL, J. 2011. Lentibulariaceae. Pp. 16-45 in Flora of Thailand, 11(1). Eds. Santisuk, T., Larsen, K., Newman, M., Chayamarit, K., Balslev, H., Phengkhlai, C., Pedersen, H., Parnell, J., Middleton, D., Newman, M., Simpson, D.A., van Welzen, P.C., Esser, H.-J., Hul, S. & Kato M. The Forest Herbarium, National Park, Wildlife and Conservation Department.

PATEL, T., GILL, L. & FARAM, M. G. 2011. Grit removal from wastewater using secondary currents in open-channel flow around bends. Journal of Environmental Engineering-Asce, 137, 1026-1039.

PERRIN, P. M., MITCHELL, F. J. G. & KELLY, D. L. 2011. Long-term deer exclusion in yew-wood and oakwood habitats in southwest Ireland: Changes in ground flora and species diversity. Forest Ecology and Management, 262, 2328-2337.

POWER, E. F. & STOUT, J. C. 2011. Organic dairy farming: impacts on insect–flower interaction networks and pollination. Journal of Applied Ecology, 48, 561–569.

Radulovic, N; Blagojevic, PD; Rabbitt, K ; Menezes, FD. 2011. Essential oil of Nepeta x faassenii Bergmans ex Stearn (N. mussinii Spreng. x N. nepetella L.): A Comparison Study , Natural Product Communications, 6, (7), 1015 – 1022.

RADULOVIĆ, N.S., MILTOJEVIĆ, A.B., MCDERMOTT, M., WALDREN, S., PARNELL, J.A., GOMES PINHEIRO, M.M., DIAS FERNANDES, P., DE SOUSA MENEZES, F. 2011. Identification of a new antinociceptive alkaloid isopropyl N-methylanthranilate from the essential oil of Choisya ternata Kunth. Journal of Ethnopharmacology, 135, 610-619.

RICHARDS, E. L., THOMAS, R. J., MARPLES, N. M., SNELLGROVE, D. L. & CABLE, J. 2011. The expression of dietary conservatism in solitary and shoaling 3-spined sticklebacks Gasterosteus aculeatus. Behavioral Ecology, 22, 738.

ROCHA, C. G. & FERREIRA, M. S. 2011. A simple theoretical approach to designing nanotube-based sensors. Physica Status Solidi B-Basic Solid State Physics, 248, 686-693.


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HUL, S. & KATO M. 2011. Flora of Thailand, 10(4), 141-469-675pp + LXXVI plates. Bangkok, The Forest Herbarium, Departments of National Parks, Wildlife and Conservation, (Editor).

SIDDALL, E. C. & MARPLES, N. M. 2011. The effect of pyrazine odor on avoidance learning and memory in wild robins Erithacus rubecula. Current Zoology, 57.

SIDDALL, E., BAIBARAC, C., BYRNE, A., BYRNE, N., DEASY, A., FLOOD, N., GOULDING, C., O'DRISCOLL, S., RABBITT, N., SWEENEY, A., WANG, Y. & DYER, M. 2011. Personas as a user-centred design tool for the built environment. Proceedings of the Institution of Civil Engineers-Engineering Sustainability, 164, 59-69.

SOH, W-K. & PARNELL, J. 2011. Comparative leaf anatomy and phylogeny of Syzygium Gaertn. Plant Systematics and Evolution, 297, 1-32. (DOI 10.1007/s00606-011-0495-2)

Souza, P.A.V.R., Jr, A.P., Alves, L.M., Souza, V.P., Cabral, L.M., Fernandes, P.D., Takiya, C.M., Menezes, F.S., Nasciutti, L.E. 2011. Effects of a nanocomposite containing Orbignya speciosa lipophilic extract on Benign Prostatic Hyperplasia, Journal of Ethnopharmacology, 135, (1), 135-146

STOUT, J. C. 2011. Plant invasions: their threats in an Irish context. Biology and Environment: Proceedings of the Royal Irish Academy, 3, 1-7.

Tanner, C.J., & Jackson, A.L. 2011. The combination of social and personal contexts affects dominance hierarchy development in shore crabs (Carcinus maenas). Animal Behaviour. 82: 1185–1192

Tanner, C.J., Salali, G.D. & Jackson, A.L. 2011. The ghost of social environments past: dominance relationships include current interactions and experience carried over from previous groups. Biology Letters. 7:818-21

TANNER, C. J., SALALT, G. D. & JACKSON, A. L. 2011. Feeding and non-feeding aggression can be induced in invasive shore crabs by altering food distribution. Behavioral Ecology and Sociobiology, 65, 249-256.

TEERAWATANANON, A., SUNGKAEW, S. & HODKINSON, T. R. 2011. Arundinella kerrii and Dimeria kerrii, Two New Endemic Species from Thailand (Poaceae, Panicoideae). Novon, 21, 149-153.

THOMASSET, M., FERNANDEZ-MANJARRES, J. F., DOUGLAS, G. C., FRASCARIA-LACOSTE, N., RAQUIN, C. & HODKINSON, T. R. 2011.Molecular and morphological characterization of reciprocal F1 hybrid ash (Fraxinus excelsior x Fraxinus angustifolia, Oleaceae) and parental species reveals symmetric character inheritance. International Journal of Plant Sciences, 172, 423-433.

TRIAS-BLASI, A., PARNELL, J.A.N. & CHAYAMARIT, K. 2011. Cissus amplexicaulis (Vitaceae), a new endemic species from Thailand. Kew Bulletin, 65, 1 – 4.

TRIAS-BLASI, A., PARNELL, J.A.N., CHAYAMARIT, K., TEERAWATANAN, A., 2011. Cayratia emarginata (Vitaceae), a new species from Thailand and Vietnam. Blumea, 56, 16-17.

UGOLETTI, P., STOUT, J. & JONES, M. 2011. Ecophysiological traits of invasive and non-invasive introduced Impatiens species. Biology and Environment: Proceedings of the Royal Irish Academy, 111B, 143 - 156.



PENDRY, C.A., MUSAYA, A.M., PATTHARAHIRANTRICIN, N., POOMA, R., SUDDEE, S., STAPLES, G., SUNGKAEW, S. & TEERAWATANANON, A. 2011. The current and future status of Floristic Provinces in Thailand. Pp.219-247 in Land use, climate change and Biodiversity Modeling. Perspectives and applications. Eds. Y. Trisurat, R.P. Shrestha, & R. Alkemade. Information Science Reference, Hershey. 489pp.

VAN WELZEN, P.F., PARNELL, J.A.N. & SLIK, J.W.F. 2011. Wallace's Line and plant distributions, two or three phytogeographical areas and where to group Java? Biological Journal of the Linnean Society, 103, 531 – 545.

VIANA, M., GRAHAM, N., WILSON, J. G. & JACKSON, A. L. 2011. Fishery discards in the Irish Sea exhibit temporal oscillations and trends reflecting underlying processes at an annual scale. Ices Journal of Marine Science, 68, 221-227.

Wahab, Ikarastika Rahayu Abdul; Blagojevic, Polina D.; Radulovic, Niko S; Boylan F. 2011. Volatiles of Curcuma mangga Val. & Zijp (Zingiberaceae) from Malaysia. CHEMISTRY & BIODIVERSITY, 8, (11), 2005-2014.

WHILDE, J. & MARPLES, N. 2011. The behavior of a zoo‐housed infant orangutan after the death of its mother. Zoo Biology, 30, 205-211.

WHILDE, J. & MARPLES, N. 2011. Effect of a birth on the behavior of a family group of Asian elephants (Elephas maximus) at Dublin Zoo. Zoo Biology. doi: 10.1002/zoo.20408


ABDALLA, M., JONES, M. & WILLIAMS, M. 2010. Simulation of N2O fluxes from Irish arable soils: effect of climate change and management. Biology and Fertility of Soils, 46, 247-260.

ABDALLA, M., JONES, M., AMBUS, P. & WILLIAMS, M. 2010. Emissions of nitrous oxide from Irish arable soils: effects of tillage and reduced N input. Nutrient Cycling in Agroecosystems, 86, 53-65.

ABDALLA, M., JONES, M., YELURIPATI, J., SMITH, P., BURKE, J. & WILLIAMS, M. 2010c. Testing DayCent and DNDC model simulations of N2O fluxes and assessing the impacts of climate change on the gas flux and biomass production from a humid pasture. Atmospheric Environment, 44, 2961-2970.

BIELBY, J., CARDILLO, M., COOPER, N. & PURVIS, A. 2010. Modelling extinction risk in multispecies data sets: phylogenetically independent contrasts versus decision trees. Biodiversity and Conservation, 19, 113-127.

BOUCHENAK-KHELLADI, Y., VERBOOM, G. A., SAVOLAINEN, V. & HODKINSON, T. R. 2010. Biogeography of the grasses (Poaceae): a phylogenetic approach to reveal evolutionary history in geographical space and geological time. Botanical Journal of the Linnean Society, 162, 543-557.

CLEARY, G. P., CORNER, L. A. L., O'KEEFFE, J. & MARPLES, N. M. 2010. Diet of the European badger (Meles meles) in the Republic of Ireland: A comparison of results from an analysis of stomach contents and rectal faeces. Mammalian Biology-Zeitschrift fur Saugetierkunde.

COOPER, N. & PURVIS, A. 2010. Body size evolution in mammals: complexity in tempo and mode. The American Naturalist, 175, 727-738.

COOPER, N., JETZ, W. & FRECKLETON, R. P. 2010. Phylogenetic comparative approaches for studying niche conservatism. Journal of Evolutionary Biology, 23, 2529–2539.


VIVARELLI, D. & PETANIDOU, T. 2010. Effects of plant population structure on flower visitation and seed set of wild plants at two spatial scales: a pan-European approach. Journal of Ecology, 98, 188-196.

DAUBER, J., JONES, M. B. & STOUT, J. C. 2010. The impact of biomass crop cultivation on temperate biodiversity. Global Change Biology Bioenergy, 2, 289-309.

DAVIES, A. 2010. A living countryside: the politics of sustainable development in rural Ireland. Journal of Environmental Policy & Planning, 12, 107-110.

DAVIS, P. A., BROWN, J. C., SAUNDERS, M., LANIGAN, G., WRIGHT, E., FORTUNE, T., BURKE, J., CONNOLLY, J., JONES, M. B. & OSBORNE, B. 2010. Assessing the effects of agricultural management practices on carbon fluxes: Spatial variation and the need for replicated estimates of Net Ecosystem Exchange. Agricultural and Forest Meteorology, 150, 564-574.

DE CESARE, M., HODKINSON, T. R. & BARTH, S. 2010. Chloroplast DNA markers (cpSSRs, SNPs) for Miscanthus, Saccharum and related grasses (Panicoideae, Poaceae). Molecular Breeding, 26, 539-544.

DONOHUE, I., LEIRA, M., HOBBS, W., LEÓN-VINTRÓ, L., O'REILLY, J. & IRVINE, K. 2010. Rapid ecosystem recovery from diffuse pollution after the Great Irish Famine. Ecological Applications, 20, 1733-1743.

DUBBER, D. & GRAY, N. F. 2010. Replacement of chemical oxygen demand (COD) with total organic carbon (TOC) for monitoring wastewater treatment performance to minimize disposal of toxic analytical waste. Journal of Environmental Science and Health Part a-Toxic/Hazardous Substances & Environmental Engineering, 45, 1595-1600.

Esteves, PF; Kuster, RM; Barbi, ND; Menezes, FD. 2010. Chemical Composition and Cytotoxic Activity of Lepechinia speciosa (St. Hill) Epling , Latin American Journal of Pharmacy, 29, (1), 38 – 44.

FITZGERALD, H., GALLEY, C., BYRNE, C. & PARNELL, J. 2010. Flora of the Burren and South-east Connemara. CD produced by ETI Bioinformatics –

Frankish, N; Menezes, FD; Mills, C; Sheridan, H. 2010. Enhancement of Insulin Release from the beta-Cell Line INS-1 by an Ethanolic Extract of Bauhinia variegata and Its Major Constituent Roseoside, Panta Medica, 76, (10), 995 – 997.

GRAY, N. F. & DELANEY, E. 2010. Measuring community response of bentic macroinvertebrates in an erosional river impacted by acid mine drainage by use of a simple model. Ecological Indicators, 10, 668-675.



SETTELE, J. 2010. Establishment of a cross-European field site network in the ALARM Project for assessing large-scale changes in biodiversity. Environmental Monitoring and Assessment, 164, 337-348.

HODKINSON, T. R., CHONGHAILE, G. N., SUNGKAEW, S., CHASE, M. W., SALAMIN, N. & STAPLETON, C. M. A. 2010. Phylogenetic analyses of plastid and nuclear DNA sequences indicate a rapid late Miocene radiation of the temperate bamboo tribe Arundinarieae (Poaceae, Bambusoideae). Plant Ecology & Diversity, 3, 109-120.

INGER, R., MCDONALD, R. A., ROGOWSKI, D., JACKSON, A. L., PARNELL, A., PRESTON, S. J., HARROD, C., GOODWIN, C., GRIFFITHS, D., DICK, J. T. A., ELWOOD, R. W., NEWTON, J. & BEARHOP, S. 2010. Do non-native invasive fish support elevated lamprey populations? Journal of Applied Ecology, 47, 121-129.

KAVANAGH, R. & DAVIES, A.R. 2010. Increasing public knowledge and awareness of biodiversity: A reference manual,

KAZUKAUSKAS, A., NEWMAN, C. & THORNE, F. 2010. Analysing the Effect of Decoupling on Agricultural Production: Evidence from Irish Dairy Farms using the Olley and Pakes Approach. German Journal of Agricultural Economics, 59, 144-157.

KELLY, D., MARPLES, N. & SINGER, H. 2010. A population of Lemon-bellied White-eye Zosterops chloris from the south-eastern peninsula of Sulawesi. Forktail, 26, 138 - 139

LEE, T. J., MARPLES, N. M. & SPEED, M. P. 2010. Can dietary conservatism explain the primary evolution of aposematism? Animal Behaviour, 79, 63-74.

MARPLES, N. M. & MAPPES, J. 2010. Can the dietary conservatism of predators compensate for positive frequency dependent selection against rare, conspicuous prey? Evolutionary Ecology, 1-13.

MCGRATH, S., HODKINSON, T. R., CHARLES, T. M., ZEN, D. G. & BARTH, S. 2010. Variation in inflorescence characters and inflorescence development in ecotypes and cultivars of Lolium perenne L. Grass and Forage Science, 65, 398-409.

MICHENEAU, C., DUFFY, K., SMITH, R., STOUT, J., CIVEYREL, L., COWAN, R., COZZOLINO, S. & FAY, M. 2010. Plastid microsatellites for the study of genetic variability in the widespread Cephalanthera longifolia, C. damasonium and C. rubra (Neottieae, Orchidaceae), and cross amplification in other Cephalanthera species. Botanical Journal of the Linnean Society 163, 181-193.

MITCHELL, F. J. G. 2010. William Arthur Watts (1930-2010). Biology and Environment-Proceedings of the Royal Irish Academy, 110B, III-IV.

MOLINOS, J. G. & DONOHUE, I. 2010. Interactions among temporal patterns determine the effects of multiple stressors. Ecological Applications, 20, 1794-1800.

O'LUANAIGH, N. D., GOODHUE, R. & GILL, L. W. 2010. Nutrient removal from on-site domestic wastewater in horizontal subsurface flow reed beds in Ireland. Ecological Engineering, 36, 1266-1276.

PARNELL, A. C., INGER, R., BEARHOP, S. & JACKSON, A. L. 2010. Source partitioning using stable isotopes: coping with too much variation. Plos One, 5.

PARNELL, J.A.N., WOMERSLEY, H.B.S., SINKORA, D., VAUGHAN, A. & HUISMAN, J.M. 2010. W.H. Harvey’s Australian Travelling Sets of Algae in the Herbarium of Trinity College Dublin (TCD) and the National Herbarium of Victoria (MEL). Biology and Environment (Proceedings of the Royal Irish Academy), 110B, 119-161.

Paula Macedo Lessa dos Santos; Alberto Sadda Japp; Lívia Gralato Lima; Jan Schripsema; Fábio de Sousa Menezes; Ricardo Machado Kuster. 2010. Antioxidant activity from the leaf extracts of Jacaranda puberula Cham., Bignoniaceae, a Brazilian medicinal plant used for blood depuration, Revista Brasileira de Farmacognosia-Brazilian Journal of Pharmacognosy , 20, (2), 147 – 153.

PEREIRA, H. C., ALLOTT, N. & COXON, C. 2010. Are seasonal lakes as productive as permanent lakes? A case study from Ireland. Canadian Journal of Fisheries and Aquatic Sciences, 67, 1291-1302.

PEREIRA, L. F. C., ROCHA, C. G., LATGE, A. & FERREIRA, M. S. 2010. A computationally efficient method for calculating the maximum conductance of disordered networks: Application to one-dimensional conductors. Journal of Applied Physics, 108.

Pinheiro, MMG; Bessa, SO; Fingolo, CE; Kuster, RM; Matheus, ME; Menezes, FS; Fernandes, PD. 2010. Antinociceptive activity of fractions from Couroupita guianensis Aubl. leaves , Journal of Ethnopharmacology, 127, (2), 407 – 413.

Rocha, FD; Yano, M; da Cunha, MR; Gabriel, FT; Cordeiro, RSB; Menezes, FS ; Kaplan, MAC. 2010. Brazilian Bromeliaceae species: isolation of arylpropanoid acid derivatives and antiradical potential , REVISTA BRASILEIRA DE FARMACOGNOSIA-BRAZILIAN JOURNAL OF PHARMACOGNOSY , 20, (2), 240 – 245.


SAUNDERS, R. 2010. Thai Forest Bulletin, 38, 1-188. (Editor).


HUL, S. & KATO M. 2010. Flora of Thailand, 10 (2), 141-198pp + XXXII plates. Bangkok, The Forest Herbarium, Departments of National Parks, Wildlife and Conservation, (Editor).


HUL, S. & KATO M. 2010. Flora of Thailand, 10 (3), 265-369pp + LVI plates. Bangkok, The Forest Herbarium, Departments of National Parks, Wildlife and Conservation, (Editor).


J. C., SYKES, M. T., TSCHEULIN, T., VILÀ, M., WALTHER, G. R., WESTPHAL, C., WINTER, M., ZOBEL, M. & SETTELE, J. 2010. Multiple stressors on biotic interactions: how climate change and alien species interact to affect pollination. Biological Reviews, 85, 777-795.

SIMAO, M. F., LEITE, R. B., ROCHA, C. & CANCELA, M. L. 2010. Changes in bioturbation of iron biogeochemistry and in molecular response of the clam Ruditapes decussates upon Perkinsus olseni infection. Archives of Environmental Contamination and Toxicology, 59, 433-443.

SMITH, R. J. & WALDREN, S. 2010. Patterns of genetic variation in Colchicum autumnale L. and its conservation status in Ireland: a broader perspective on local plant conservation. Conservation Genetics, 11, 1351-1361.

SOH, W.K. & PARNELL, J. 2010. The phylogeny and evolution of morphological characters in Syzygium (Myrtaceae): towards a taxonomic revision in Malesia. Abstract of 8th International Flora Malesiana Symposium – The past, present and future of Flora Malesiana. Pp. 73. Singapore Botanic Gardens.

SUKSATHAN, P. & PARNELL, J.A.N. 2010. Three new species and two new records of Utricularia L. (Lentibulariaceae) from Northern Thailand. Thai Forest Bulletin, 38, 23-32.

THOMAS, R. J., KING, T. A., FORSHAW, H. E., MARPLES, N. M., SPEED, M. P. & CABLE, J. 2010. The response of fish to novel prey: evidence that dietary conservatism is not restricted to birds. Behavioral Ecology, 21, 669-675.

TRIAS-BLASI, A., PARNELL, J.A.N. & CHAYAMARIT, K. 2010. Cissus amplexicaulis (Vitaceae), a new endemic species from Thailand. Kew Bulletin, 65, 1-4.

ULLOA, C. U., NICKRENT, D. L., WHITEFOORD, C. & KELLY, D. L. 2010. Hondurodendron, a New Monotypic Genus of Aptandraceae from Honduras 1. Annals of the Missouri Botanical Garden, 97, 457-467

UR-RASHID, M., PARNELL, J. & PATON, A. 2010. Revision of the genus Gmelina (Lamiaceae) in Southeast Asia. Abstract of 8th International Flora Malesiana Symposium – The past, present and future of Flora Malesiana. Pp. 71. Singapore Botanic Gardens.

VAN GROENIGEN, K. J., BLOEM, J., BAATH, E., BOECKX, P., ROUSK, J., BODE, S., FORRISTAL, D. & JONES, M. B. 2010. Abundance, production and stabilization of microbial biomass under conventional and reduced tillage. Soil Biology & Biochemistry, 42, 48-55.


ABDALLA, M., JONES, M., SMITH, P. & WILLIAMS, M. 2009a. Nitrous oxide fluxes and denitrification sensitivity to temperature in Irish pasture soils. Soil Use and Management, 25, 376-388.

ABDALLA, M., WATTENBACH, M., SMITH, P., AMBUS, P., JONES, M. & WILLIAMS, M. 2009b. Application of the DNDC model to predict emissions of N2O from Irish agriculture. Geoderma, 151, 327-337.

ALBANITO, F., SAUNDERS, M. & JONES, M. B. 2009. Automated diffusion chambers to monitor diurnal and seasonal dynamics of the soil CO2 concentration profile. European Journal of Soil Science, 60, 507-514.

BOUCHENAK-KHELLADI, Y., VERBOOM, G. A., HODKINSON, T. R., SALAMIN, N., FRANCOIS, O., NI CHONGHAILE, G. & SAVOLAINEN, V. 2009. The origins and diversification of C-4 grasses and savanna-adapted ungulates. Global Change Biology, 15, 2397-2417.

BYRNE, C. & PARNELL, J. 2009. Flora of Thailand: Phylogenetic revision of the Clusiaceae and Hypericaceae. CD produced by ETI Bioinformatics –

CARROLL, E., SPARKS, T., DONNELLY, A. & COONEY, T. 2009. Irish phenological observations from the early 20th century reveal a strong response to temperature. Biology and Environment-Proceedings of the Royal Irish Academy, 109B, 115-126.

CLEARY, G. P., CORNER, L. A. L., O'KEEFFE, J. & MARPLES, N. M. 2009. The diet of the badger Meles meles in the Republic of Ireland. Mammalian Biology-Zeitschrift fur Saugetierkunde, 74, 438-447.

DAVIES, A. R. 2009. Clean and green? A governance analysis of waste management in New Zealand. Journal of Environmental Planning and Management, 52, 157-176.

DAVIES, A. R. 2009. Does Sustainability Count? Environmental policy, sustainable development and the governance of grassroots sustainability enterprise in Ireland. Sustainable Development, 17, 174-182.

DIEKMANN, K., HODKINSON, T. R., WOLFE, K. H., VAN DEN BEKEROM, R., DIX, P. J. & BARTH, S. 2009. Complete chloroplast genome sequence of a major allogamous forage species, perennial ryegrass (Lolium perenne L.). DNA Research, 16, 165-176.

DONDINI, M., HASTINGS, A., SAIZ, G., JONES, M. B. & SMITH, P. 2009. The potential of Miscanthus to sequester carbon in soils: comparing field measurements in Carlow, Ireland to model predictions. Global Change Biology Bioenergy, 1, 413-425.

DONDINI, M., VAN GROENIGEN, K. J., DEL GALDO, I. & JONES, M. B. 2009. Carbon sequestration under Miscanthus: a study of C-13 distribution in soil aggregates. Global Change Biology Bioenergy, 1, 321-330.

DONNELLY, A., COONEY, T., JENNINGS, E., BUSCARDO, E. & JONES, M. 2009. Response of birds to climatic variability; evidence from the western fringe of Europe. International Journal of Biometeorology, 53, 211-220.

DONOHUE, I. & MOLINOS, J. G. 2009. Impacts of increased sediment loads on the ecology of lakes. Biological Reviews, 84, 517-531.

DONOHUE, I., DONOHUE, L. A., AININ, B. N. & IRVINE, K. 2009. Assessment of eutrophication pressure on lakes using littoral invertebrates. Hydrobiologia, 633, 105-122.

DONOHUE, I., JACKSON, A. L., PUSCH, M. T. & IRVINE, K. 2009. Nutrient enrichment homogenizes lake benthic assemblages at local and regional scales. Ecology, 90, 3470-3477.

DUBBER, D. & GRAY, N. F. 2009. Enumeration of protozoan ciliates in activated sludge: Determination of replicate number using probability. Water Research, 43, 3443-3452.

DUFFY, K., KINGSTON, N., SAYERS, B., ROBERTS, D. & STOUT, J. 2009. Inferring national and regional declines of rare orchid species using probabilistic models. Conservation Biology, 23, 184-195.

DUFFY, K., SCOPECE, G., COZZOLINO, S., FAY, M., SMITH, R. & STOUT, J. 2009. The ecology and genetic diversity of the dense-flowered orchid (Neotinea maculata) at the centre and edge of its range. Annals of Botany, 104, 507-516.

DYER, M., UTILI, S. & ZIELINSKI, M. 2009. Field survey of desiccation fissuring of flood embankments. Proceedings of the Institution of Civil Engineers-Water Management, 162, 221-232.

FINNEGAN, L., POOLE, A., LAWTON, C. & ROCHFORD, J. 2009. Morphological diversity of the red squirrel, Sciurus vulgaris, in Ireland. European Journal of Wildlife Research, 55, 145-151.

GILL, L. W., O'LUANAIGH, N., JOHNSTON, P. M., MISSTEAR, B. D. R. & O'SUILLEABHAIN, C. 2009b. Nutrient loading on subsoils from on-site wastewater effluent, comparing septic tank and secondary treatment systems. Water Research, 43, 2739-2749.

GILL, L. W., O'SULLEABHAIN, C., MISSTEAR, B. D. R. & JOHNSTON, P. M. 2009c. Comparison of Stratified Sand Filters and Percolation Trenches for On-Site Wastewater Treatment. Journal of Environmental Engineering-Asce, 135, 8-16.

GILL, L., DORAN, C., MISSTEAR, D. & SHEAHAN, B. 2009a. The use of recycled glass as a filter media for on-site wastewater treatment. Desalination and Water Treatment, 4, 198-205.

JACKSON, A. L., INGER, R., BEARHOP, S. & PARNELL, A. 2009. Erroneous behaviour of MixSIR, a recently published Bayesian isotope mixing model: a discussion of Moore & Semmens (2008). Ecology Letters, 12, E1-E5.

JENNINGS, E., ALLOTT, N., PIERSON, D. C., SCHNEIDERMAN, E. M., LENIHAN, D., SAMUELSSON, P. & TAYLOR, D. 2009. Impacts of climate change on phosphorus loading from a grassland catchment: Implications for future management. Water Research, 43, 4316-4326.

KENNY, T. & GRAY, N. F. 2009. A preliminary survey of household and personal carbon dioxide emissions in Ireland. Environment International, 35, 259-272.

KIRWAN, D. F., DE MENEZES, V. M., ROCHA, C. G., COSTA, A. T., MUNIZ, R. B., FAGAN, S. B. & FERREIRA, M. S. 2009. Enhanced spin-valve effect in magnetically doped carbon nanotubes. Carbon, 47, 2533-2537.

MCGINNITY, P., JENNINGS, E., DEEYTO, E., ALLOTT, N., SAMUELSSON, P., ROGAN, G., WHELAN, K. & CROSS, T. 2009. Impact of naturally spawning captive-bred Atlantic salmon on wild populations: depressed recruitment and increased risk of climate-mediated extinction. Proceedings of the Royal Society B-Biological Sciences, 276, 3601-3610.

MCNABOLA, A. & GILL, L. W. 2009. The control of environmental tobacco smoke: a policy review. International Journal of Environmental Research and Public Health, 6, 741-758.

MCNABOLA, A., BRODERICK, B. M. & GILL, L. W. 2009a. The impacts of inter-vehicle spacing on in-vehicle air pollution concentrations in idling urban traffic conditions. Transportation Research Part D-Transport and Environment, 14, 567-575.

MCNABOLA, A., BRODERICK, B. M. & GILL, L. W. 2009b. A numerical investigation of the impact of low boundary walls on pedestrian exposure to air pollutants in urban street canyons. Science of the Total Environment, 407, 760-769.

MCNABOLA, A., BRODERICK, B. M. & GILL, L. W. 2009c. A principal components analysis of the factors effecting personal exposure to air pollution in urban commuters in Dublin, Ireland. Journal of Environmental Science and Health Part a-Toxic/Hazardous Substances & Environmental Engineering, 44, 1219-1226.

MILBAU, A., STOUT, J. C., GRAAE, B. J. & NIJS, I. 2009. A hierarchical framework for integrating invasibility experiments incorporating different factors and spatial scales. Biological Invasions, 11, 941-950.

MOLINOS, J. G. & DONOHUE, I. 2009. Differential contribution of concentration and exposure time to sediment dose effects on stream biota. Journal of the North American Benthological Society, 28, 110-121.

NEILL, L. O., VELDHUIZEN, T., DE JONGH, A. & ROCHFORD, J. 2009. Ranging behaviour and socio-biology of Eurasian otters (Lutra lutra) on lowland mesotrophic river systems. European Journal of Wildlife Research, 55, 363-370.

NIENHUIS, C. M. & STOUT, J. C. 2009. Effectiveness of native bumblebees as pollinators of the alien invasive plant Impatiens glandulifera (Balsiminaceae) in Ireland. Journal of Pollination Ecology, 1, 1-11.

NIENHUIS, C. M., DIETZSCH, A. C. & STOUT, J. C. 2009. The impacts of an invasive alien plant and its removal on native bees. Apidologie, 40 450-463.
O'LUANAIGH, N., JOHNSTON, P., MISSTEAR, B., PATEL, T. & GILL, L. 2009. A comparative study on the treatment performance of a conventional septic tank system and reed bed-soil absorption system receiving domestic effluent. Desalination and Water Treatment, 4, 45-53.

PARNELL, J. 2009. Flora of Thailand 10 (1), 1-140pp+ XLIV plates. Eds. T. Santisuk, K. Larsen, M. Newman, K. Chayamarit, H.-J Esser, S. Hul, M. Kato, D. Middleton, H. Pedersen, J. Parnell, C. Phengkhlai & P.C. van Welzen. The Forest Herbarium, National Park, Wildlife and Conservation Department, (Editor).

PARNELL, J. 2009. W.H. Harvey. In Dictionary of Irish Biography. Volume 4, 513-514. Eds. McGuire, J. & Quinn, J. Cambridge University Press & Royal Irish Academy. Ca. 7,000pp.

2009. Biogeographic links between Thailand and Nepal and the potential for collaboration between their Flora projects. Thai Forest Bulletin, Special Issue, 169-185.

REDAELLI, M. & DYER, M. 2009. Discussion: A methodology for regional-scale flood risk assessment. Proceedings of the Institution of Civil Engineers-Water Management, 162, 347-347.

ROCHA, C., IBANHEZ, J. & LEOTE, C. 2009. Benthic nitrate biogeochemistry affected by tidal modulation of Submarine Groundwater Discharge (SGD) through a sandy beach face, Ria Formosa, Southwestern Iberia. Marine Chemistry, 115, 43-58.

ROCHE, J. R., MITCHELL, F. J. G. & WALDREN, S. 2009. Plant community ecology of Pinus sylvestris, an extirpated species reintroduced to Ireland. Biodiversity and Conservation, 18, 2185-2203.

SANTISUK, T., WILKIN, P., CHAYAMARIT, K., SIMPSON, D.A., PARNELL, J.A.N., MIDDLETON, D.J., VAN WELZEN, P., ESSER, H.-J., UTTERIDGE, T. & SANDERS, R. 2009. Thai Forest Bulletin, 37, 1–155. (Editor).

SANTISUK, T., WILKIN, P., CHAYAMARIT, K., SIMPSON, D.A., PARNELL, J.A.N., MIDDLETON, D.J., VAN WELZEN, P., ESSER, H.-J., UTTERIDGE, T. & SANDERS, R. 2009. Thai Forest Bulletin, Special Issue, 1-218. (Editor).

STOUT, J. C. & MORALES, C. L. 2009. Ecological impacts of invasive alien species on bees. Apidologie, 40, 388-409.

STYLES, D., O'BRIEN, K. & JONES, M. B. 2009. A quantitative integrated assessment of pollution prevention achieved by Integrated Pollution Prevention Control licensing. Environment International, 35, 1177-1187.

STYLES, D., O'BRIEN, P., O'BOYLE, S., CUNNINGHAM, P., DONLON, B. & JONES, M. B. 2009. Measuring the environmental performance of IPPC industry: I. Devising a quantitative science-based and policy-weighted Environmental Emissions Index. Environmental Science & Policy, 12, 226-242.

STYLES, D., O'LEARY, E. & JONES, M. B. 2009. Measuring the environmental performance of IPPC industry: II. Applying the Environmental Emissions Index to quantify environmental performance trends from routinely reported data. Environmental Science & Policy, 12, 243-256.

SULLEABHAIN, C. O., GILL, L. W., MISSTEAR, B. D. R. & JOHNSTON, P. M. 2009. Fate of endocrine-disrupting chemicals in percolating domestic wastewater effluent. Water and Environment Journal, 23, 110-118.

SUNGKAEW, S., STAPLETON, C., SALAMIN, N. & HODKINSON, T. 2009. Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s. Journal of Plant Research, 122, 95-108.

TRIAS-BLASI, A., PARNELL, J.A.N. & CHAYAMARIT, K. 2009. Taxonomic notes on two Cissus (Vitaceae) species in Thailand. Thai Forest Bulletin, Special Issue, 205-211.

VILÀ, M., BARTOMEUS, I., DIETZSCH, A. C., PETANIDOU, T., STEFFAN-DEWENTER, I., STOUT, J. C. & TSCHEULIN, T. 2009. Invasive plant integration into native plant–pollinator networks across Europe. Proceedings of the Royal Society B: Biological Sciences, 276, 3887-3893.

For earlier publications, see PI webpages

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