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2017

Teasdale, M.D., Fiddyment, S., Vnoucek, J., Mattiangeli, V., Speller, C., Binois, A., Carver, M., Dand, C., Newfield, T.P., Webb, C.C., Bradley, D.G., Collins, M.J. The York Gospels: a one thousand year biological palimpsest. bioRxiv. 2017 doi:146324
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Martiniano, R., Cassidy, L.M., Ó'Maoldúin, R., McLaughlin, R., Silva, N.M., Manco, L., Fidalgo, D., Pereira, T., Coelho, M.J., Serra, M., Burger, J., Parreira, R., Moran, E., Valera, A.C., Porfirio, E., Boaventura, R., Silva, A.M., Bradley, D.G. The population genomics of archaeological transition in west Iberia: Investigation of ancient substructure using imputation and haplotype-based methods. PLoS Genet. 2017 Jul 27;13(7) PMID 28749934
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McLaughlin, R.L., Schijven, D., van Rheenen, W., van Eijk, K.R., O'Brien, M., Kahn, R.S., Ophoff, R.A., Goris, A., Bradley, D.G., Al-Chalabi, A., van den Berg, L.H., Luykx, J.J., Hardiman, O., Veldink, J.H., Project MinE GWAS Consortium, Schizophrenia Working Group of the Psychiatric Genomics Consortium. Genetic correlation between amyotrophic lateral sclerosis and schizophrenia. Nat Commun. 2017 Mar 21;8:14774. PMID 28322246

Cassidy, L.M., Teasdale, M.D., Carolan, S., Enright, R., Werner, R., Bradley, D.G., Finlay,E.K., Mattiangeli, V. Capturing goats: documenting two hundred years of mitochondrial DNA diversity among goat populations from Britain and Ireland. Biology Letters 2017 Mar;13(3). PMID:28250207

Jones, E.R., Zarina, G., Moiseyev, V., Lightfoot, E., Nigst, P.R., Manica, A., Pinhasi, R., Bradley, D.G. The Neolithic Transition in the Baltic Was Not Driven by Admixture with Early European Farmers. Current Biology, 2017 Feb 20;27(4):576-582. doi: 10.1016/j.cub.2016.12.060. PMID28162894

Siska,V., Jones,E.R., Jeon,S., Bhak,Y, Kim,H-M., Cho,Y.S., Kim,H., Lee,K.,Veselovskaya,E.,Balueva,T.,Gallego-Llorente,M., Hofreiter,M., Bradley,D.G., Eriksson,A.,Pinhasi,R.,Bhak,J. and Manica, A. Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago. Science Advances 01 Feb 2017: Vol. 3, no. 2, e1601877,doi: 10.1126/sciadv.1601877 PMID28164156
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2016

O'Sullivan NJ, Teasdale MD, Mattiangeli V, Maixner F, Pinhasi R, Bradley DG, Zink A. A whole mitochondria analysis of the Tyrolean Iceman's leather provides insights into the animal sources of Copper Age clothing. Sci Rep. 2016 Aug 18;6:31279. doi: 10.1038/srep31279. PMID:27537861
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Hollund H. I. , Teasdale M. D. ,Mattiangeli V., Sverrisdottir O. Ó. ,Bradley D. G.& O’Connor T. Pick the Right Pocket. Sub-sampling of Bone Sections to Investigate Diagenesis and DNA Preservation. Int. J. Osteoarchaeol. 2016 DOI: 10.1002/oa.2544

Broushaki F, Thomas MG, Link V, López S, van Dorp L, Kirsanow K, Hofmanová Z, Diekmann Y, Cassidy LM, Díez-del-Molino D, Kousathanas A, Sell C, Robson HK, Martiniano R, Blöcher J, Scheu A, Kreutzer S, Bollongino R, Bobo D, Davoudi H, Munoz O, Currat M, Abdi K, Biglari F, Craig OE, Bradley DG, Shennan S, Veeramah KR, Mashkour M, Wegmann D, Hellenthal G, Burger J. Early Neolithic genomes from the eastern Fertile Crescent. Science. 2016 Jul 29;353(6298):499-503. PMID:27417496

Hofmanová Z, Kreutzer S, Hellenthal G, Sell C, Diekmann Y, Díez-Del-Molino D, van Dorp L, López S, Kousathanas A, Link V, Kirsanow K, Cassidy LM, Martiniano R, Strobel M, Scheu A, Kotsakis K, Halstead P, Triantaphyllou S, Kyparissi-Apostolika N, Urem-Kotsou D, Ziota C, Adaktylou F, Gopalan S, Bobo DM, Winkelbach L, Blöcher J, Unterländer M, Leuenberger C, Çilingiro?lu Ç, Horejs B, Gerritsen F, Shennan SJ, Bradley DG, Currat M, Veeramah KR, Wegmann D, Thomas MG, Papageorgopoulou C, Burger J. Early farmers from across Europe directly descended from Neolithic Aegeans. Proc Natl Acad Sci U S A. 2016 Jun 21;113(25):6886-91.Epub. PMID:27274049

Frantz LA, Mullin VE, Pionnier-Capitan M, Lebrasseur O, Ollivier M, Perri A, Linderholm A, Mattiangeli V, Teasdale MD, Dimopoulos EA, Tresset A, Duffraisse M, McCormick F, Bartosiewicz L, Gál E, Nyerges ÉA, Sablin MV, Bréhard S, Mashkour M, Balasescu A, Gillet B, Hughes S, Chassaing O, Hitte C, Vigne JD, Dobney K, Hänni C, Bradley DG, Larson G. Genomic and archaeological evidence suggest a dual origin of domestic dogs. Science. 2016 Jun 3;352(6290):1228-31 PMID:27257259
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Richardson IW, Berry DP, Wiencko HL, Higgins IM, More SJ, McClure J, Lynn DJ, Bradley DG. A genome-wide association study for genetic susceptibility to Mycobacterium bovis infection in dairy cattle identifies a susceptibility QTL on chromosome 23. Genet Sel Evol. 2016 Mar 9;48:19. PMID:26960806.

Martiniano R, Caffell A, Holst M, Hunter-Mann K, Montgomery J, Müldner G, McLaughlin RL, Teasdale MD, van Rheenen W, Veldink JH, van den Berg LH, Hardiman O, Carroll M, Roskams S, Oxley J, Morgan C, Thomas MG, Barnes I, McDonnell C, Collins MJ, Bradley DG. Genomic signals of migration and continuity in Britain before the Anglo-Saxons. Nat Commun. 2016 Jan 19. PMID:26783717.
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2015

Cassidy LM, Martiniano R, Murphy EM, Teasdale MD, Mallory J, Hartwell B, Bradley DG. Neolithic and Bronze Age migration to Ireland and establishment of the insular Atlantic genome. Proc Natl Acad Sci U S A. 2015 Dec 28. PMID:26712024.
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Fiddyment S, Holsinger B, Ruzzier C, Devine A, Binois A, Albarella U, Fischer R, Nichols E, Curtis A, Cheese E, Teasdale MD, Checkley-Scott C, Milner SJ, Rudy KM, Johnson EJ, Vnou ek J, Garrison M, McGrory S, Bradley DG, Collins MJ. Animal origin of 13th-century uterine vellum revealed using noninvasive peptide fingerprinting. Proc Natl Acad Sci U S A. 2015 Nov 23. PMID:26598667.
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Jones ER, Gonzalez-Fortes G, Connell S, Siska V, Eriksson A, Martiniano R, McLaughlin RL, Gallego Llorente M, Cassidy LM, Gamba C, Meshveliani T, Bar-Yosef O, Müller W, Belfer-Cohen A, Matskevich Z, Jakeli N, Higham TF, Currat M, Lordkipanidze D, Hofreiter M, Manica A, Pinhasi R, Bradley DG. Upper Palaeolithic genomes reveal deep roots of modern Eurasians. Nat Commun. 2015 Nov 16 PMID:26567969.
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Park SD, Magee DA, McGettigan PA, Teasdale MD, Edwards CJ, Lohan AJ, Murphy A, Braud M, Donoghue MT, Liu Y, Chamberlain AT, Rue-Albrecht K, Schroeder S, Spillane C, Tai S, Bradley DG, Sonstegard TS, Loftus BJ, MacHugh DE. Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle. Genome Biol. 2015 Oct 26;16(1):234. PMID:26498365.
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Gamba C, Hanghřj K, Gaunitz C, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, Bradley DG, Orlando L Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing. Mol Ecol Resour. 2015 Sep 24. PMID:26401836.


Llorente MG, Jones ER, Eriksson A, Siska V, Arthur KW, Arthur JW, Curtis MC, Stock JT, Coltorti M, Pieruccini P, Stretton S, Brock F, Higham T, Park Y, Hofreiter M, Bradley DG, Bhak J, Pinhasi R, Manica A. Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent. Science. 2015 Oct 8. pii: aad2879. PMID:26449472.
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Aloraifi F, McDevitt T, Martiniano R, McGreevy J, McLaughlin R, Egan CM, Cody N, Meany M, Kenny E, Green AJ, Bradley DG, Geraghty JG, Bracken AP Detection of novel germline mutations for breast cancer in non-BRCA1/2 families. FEBS J. 2015 Sep;282(17):3424-37. PMID:26094658.


Kassahun Y, Mattiangeli V, Ameni G, Hailu E, Aseffa A, Young DB, Hewinson RG, Vordermeier M, Bradley DG. Admixture mapping of tuberculosis and pigmentation-related traits in an African-European hybrid cattle population. Frontiers in Genetics. 15 June 2015 fgene.2015.00210.


Purfield DC, Bradley DG, Evans RD, Kearney FJ, Berry DP. Genome-wide association study for calving performance using high-density genotypes in dairy and beef cattle. Genet Sel Evol. 2015 Jun 12;47(1):47 PMID:26065883.


Vegh P, Magee DA, Nalpas NC, Bryan K, McCabe MS, Browne JA, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ. MicroRNA profiling of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by microRNA regulation of endocytosis and lysosome trafficking. Tuberculosis (Edinb). 2015 Jan;95(1):60-7. PMID:25692199.


McLaughlin RL, Kenna KP, Vajda A, Heverin M, Byrne S, Donaghy CG, Cronin S, Bradley DG, Hardiman O Homozygosity mapping in an Irish ALS case–control cohort describes local demographic phenomena and points towards potential recessive risk loci Genomics. 2015 Jan 23. [Epub ahead of print] doi: 10.1016/j.ygeno.2015.01.002.


2014

M. D. Teasdale, N. L. van Doorn, S. Fiddyment, C. C. Webb, T. O'Connor, M. Hofreiter, M. J. Collins, D. G. Bradley Paging through history: parchment as a reservoir of ancient DNA for next generation sequencing Phil. Trans. R. Soc., Dec 2014 B 370: 20130379 DOI: 10.1098/rstb.2013.0379
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Ian W Richardson, Dan G Bradley, Isabella M Higgins, Simon J More, Jennifer McClure and Donagh P Berry Variance components for susceptibility to Mycobacterium bovis infection in dairy and beef cattle Genetics Selection Evolution 2014, 46:77 doi:10.1186/s12711-014-0077-1


Sanderson ND, Norman PJ, Guethlein LA, Ellis SA, Williams C, Breen M, Park SD, Magee DA, Babrzadeh F, Warry A, Watson M, Bradley DG, MacHugh DE, Parham P, Hammond JA Definition of the Cattle Killer Cell Ig-like Receptor Gene Family: Comparison with Aurochs and Human Counterparts J Immunol. 2014 Nov 14. pii: 1401980 PMID:25398326


Cristina Gamba, Eppie R. Jones, Matthew D. Teasdale, Russell L. McLaughlin, Gloria Gonzalez-Fortes, Valeria Mattiangeli, László Domboróczki, Ivett K?vári, Ildikó Pap, Alexandra Anders, Alasdair Whittle, János Dani, Pál Raczky, Thomas F. G. Higham, Michael Hofreiter, Daniel G. Bradley, Ron Pinhasi Genome flux and stasis in a five millennium transect of European prehistory Nature Communications October 2014 PMID:25334030
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McLaughlin RL, Kenna KP, Vajda A, Bede P, Elamin M, Cronin S, Donaghy CG, Bradley DG, Hardiman O. A second-generation Irish genome-wide association study for amyotrophic lateral sclerosis. Neurobiol Aging 2014 Sept. DOI:10.1016/j.neurobiolaging.2014.08.030.


Martiniano R, Coelho C, Ferreira MT, Neves MJ, Pinhasi R, Bradley DG. Genetic Evidence of African Slavery at the Beginning of the Trans-Atlantic Slave Trade. Sci Rep. 2014 Aug 8;4:5994. PMID:25104065


Bede P, Elamin M, Byrne S, McLaughlin RL, Kenna K, Vajda A, Fagan A, Bradley DG, Hardiman O Patterns of cerebral and cerebellar white matter degeneration in ALS J Neurol Neurosurg Psychiatry. 2014 Jul 21. pii: jnnp-2014-308172. PMID:25053771


Gerbault P, Allaby RG, Boivin N, Rudzinski A, Grimaldi IM, Pires JC, Climer Vigueira C, Dobney K, Gremillion KJ, Barton L, Arroyo-Kalin M, Purugganan MD, Rubio de Casas R, Bollongino R, Burger J, Fuller DQ, Bradley DG, Balding DJ, Richerson PJ, Gilbert MT, Larson G, Thomas MG. Storytelling and story testing in domestication. Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6159-64. PMID:24753572


Larson G, Bradley DG. How much is that in dog years? The advent of canine population genomics. PLoS Genet. 2014 Jan;10(1) PMID:24453989


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